RNA–Protein interactions for RNA: ENST00000542786.1

LDB3-207, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 1,889 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-207ENST00000542786 TEX11Q8IYF3 940 aa16.35■□□□□ 0.21
LDB3-207ENST00000542786 JMYQ8N9B5 988 aa16.35■□□□□ 0.21
LDB3-207ENST00000542786 VPS54Q9P1Q0 977 aa16.35■□□□□ 0.21
LDB3-207ENST00000542786 ZKSCAN5Q9Y2L8 839 aa16.35■□□□□ 0.21
LDB3-207ENST00000542786 SUGT1Q9Y2Z0 365 aa16.35■□□□□ 0.21
LDB3-207ENST00000542786 ZNF646O15015 1829 aaPredicted RBP16.34■□□□□ 0.21
LDB3-207ENST00000542786 hCG_1642624A0A1W2PR95 340 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 CUTAO60888 179 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 ZNF202O95125 648 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 RXRBP28702 533 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 ZNF165P49910 485 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 GTF2IP78347 998 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 SLC35G1Q2M3R5 365 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 RILPL1Q5EBL4 403 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 MPNDQ8N594 471 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 MASTLQ96GX5 879 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 TIGD1Q96MW7 591 aa16.34■□□□□ 0.21
LDB3-207ENST00000542786 SAP30BPQ9UHR5 308 aaKnown RBP16.34■□□□□ 0.21
LDB3-207ENST00000542786 FBXO2Q9UK22 296 aaPredicted RBP16.34■□□□□ 0.21
LDB3-207ENST00000542786 FAM205CA6NFA0 338 aa16.33■□□□□ 0.21
LDB3-207ENST00000542786 ALDH1B1P30837 517 aa16.33■□□□□ 0.21
LDB3-207ENST00000542786 GRM4Q14833 912 aa16.33■□□□□ 0.21
LDB3-207ENST00000542786 CTCFLQ8NI51 663 aaPredicted RBP16.33■□□□□ 0.21
LDB3-207ENST00000542786 TAOK2Q9UL54 1235 aa16.33■□□□□ 0.21
LDB3-207ENST00000542786 PARP3Q9Y6F1 533 aa16.33■□□□□ 0.21
LDB3-207ENST00000542786 USP17L3A6NCW0 530 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 USP17L4A6NCW7 530 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 EARS2Q5JPH6 523 aaKnown RBP16.33■□□□□ 0.2
LDB3-207ENST00000542786 MSL1Q68DK7 614 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 USP17L1Q7RTZ2 530 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 SLF2Q8IX21 1173 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 CLIC6Q96NY7 704 aa16.33■□□□□ 0.2
LDB3-207ENST00000542786 ANO8Q9HCE9 1232 aaPredicted RBP16.33■□□□□ 0.2
LDB3-207ENST00000542786 RGS17Q9UGC6 210 aaPredicted RBP16.33■□□□□ 0.2
LDB3-207ENST00000542786 MYH1P12882 1939 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 A0A087WWV3 80 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 RIMBP2O15034 1052 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 VEGFAP15692 232 aaPredicted RBP16.32■□□□□ 0.2
LDB3-207ENST00000542786 PTPREP23469 700 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 NOVP48745 357 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 CDK8P49336 464 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 AKAP17AQ02040 695 aaKnown RBP16.32■□□□□ 0.2
LDB3-207ENST00000542786 CCDC178Q5BJE1 867 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 ERCC4Q92889 916 aaPredicted RBP16.32■□□□□ 0.2
LDB3-207ENST00000542786 KIAA1468Q9P260 1216 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 PCDHB6Q9Y5E3 794 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 ADAMTSL1Q8N6G6 1762 aa16.32■□□□□ 0.2
LDB3-207ENST00000542786 ZNF500O60304 480 aaPredicted RBP16.31■□□□□ 0.2
LDB3-207ENST00000542786 PFKFB3Q16875 520 aaPredicted RBP16.31■□□□□ 0.2
LDB3-207ENST00000542786 AMOTL1Q8IY63 956 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 KRI1Q8N9T8 703 aaKnown RBP16.31■□□□□ 0.2
LDB3-207ENST00000542786 PNMA1Q8ND90 353 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 KAT14Q9H8E8 782 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 ANO10Q9NW15 660 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 SCG2P13521 617 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 KRT2P35908 639 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 GRIN1Q05586 938 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 DPP8Q6V1X1 898 aaPredicted RBP16.31■□□□□ 0.2
LDB3-207ENST00000542786 DHX40Q8IX18 779 aaKnown RBP16.31■□□□□ 0.2
LDB3-207ENST00000542786 SDF4Q9BRK5 362 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 MKNK2Q9HBH9 465 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 MAD2L2Q9UI95 211 aa16.31■□□□□ 0.2
LDB3-207ENST00000542786 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.31■□□□□ 0.2
LDB3-207ENST00000542786 WNT7AO00755 349 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 XBP1P17861 261 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 KIF5BP33176 963 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 SYKP43405 635 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 GABPAQ06546 454 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 NOM1Q5C9Z4 860 aaKnown RBP16.3■□□□□ 0.2
LDB3-207ENST00000542786 STYK1Q6J9G0 422 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 PLA2G4DQ86XP0 818 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 STAG2Q8N3U4 1231 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 ZNF579Q8NAF0 562 aaKnown RBP16.3■□□□□ 0.2
LDB3-207ENST00000542786 NEDD1Q8NHV4 660 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 PLIN4Q96Q06 1357 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 ZC3H12CQ9C0D7 883 aaKnown RBP16.3■□□□□ 0.2
LDB3-207ENST00000542786 CABP5Q9NP86 173 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 TUBE1Q9UJT0 475 aa16.3■□□□□ 0.2
LDB3-207ENST00000542786 SLX4Q8IY92 1834 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 ADAMTS3O15072 1205 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 TMEM47Q9BQJ4 181 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 MXD3Q9BW11 206 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 SRPRBQ9Y5M8 271 aaKnown RBP16.29■□□□□ 0.2
LDB3-207ENST00000542786 PALM3A6NDB9 673 aaPredicted RBP16.29■□□□□ 0.2
LDB3-207ENST00000542786 TSPY3P0CV98 308 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 TSPY8P0CW00 308 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 ZNF75DP51815 510 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 DOK7Q18PE1 504 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 SARM1Q6SZW1 724 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 C2CD5Q86YS7 1000 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 ELOA2Q8IYF1 753 aaPredicted RBP16.29■□□□□ 0.2
LDB3-207ENST00000542786 ZNF444Q8N0Y2 327 aaPredicted RBP16.29■□□□□ 0.2
LDB3-207ENST00000542786 CAMKK2Q96RR4 588 aa16.29■□□□□ 0.2
LDB3-207ENST00000542786 DDX4Q9NQI0 724 aaKnown RBP16.29■□□□□ 0.2
LDB3-207ENST00000542786 EYA3Q99504 573 aa16.28■□□□□ 0.2
LDB3-207ENST00000542786 BPIFA3Q9BQP9 254 aa16.28■□□□□ 0.2
LDB3-207ENST00000542786 ZNF287Q9HBT7 754 aa16.28■□□□□ 0.2
LDB3-207ENST00000542786 TRIM75PA6NK02 468 aa16.27■□□□□ 0.2
LDB3-207ENST00000542786 CYTH3O43739 400 aa16.27■□□□□ 0.2
LDB3-207ENST00000542786 PTMAP06454 111 aaKnown RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms