RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CLUAP1Q96AJ1 413 aa21.82■■□□□ 1.08
CLSTN3-214ENST00000542663 BCAR3O75815 825 aa21.81■■□□□ 1.08
CLSTN3-214ENST00000542663 HLA-DOAP06340 250 aa21.81■■□□□ 1.08
CLSTN3-214ENST00000542663 ZYXQ15942 572 aaKnown RBP21.81■■□□□ 1.08
CLSTN3-214ENST00000542663 RABGAP1Q9Y3P9 1069 aa21.81■■□□□ 1.08
CLSTN3-214ENST00000542663 NDUFB9Q9Y6M9 179 aa21.81■■□□□ 1.08
CLSTN3-214ENST00000542663 IPO8O15397 1037 aaKnown RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 SSH3Q8TE77 659 aa21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 EDC3Q96F86 508 aaKnown RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 TLR7Q9NYK1 1049 aaKnown RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 DBNLQ9UJU6 430 aaKnown RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 COL11A1P12107 1806 aaPredicted RBP21.8■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L15C9J2P7 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L13C9JLJ4 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L11C9JVI0 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L18D6R9N7 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L22D6RA61 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L17D6RBQ6 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L19D6RCP7 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L20D6RJB6 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 IGSF3O75054 1194 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 CYP7A1P22680 504 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 USP17L24Q0WX57 530 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 CATSPERGQ6ZRH7 1159 aa21.79■■□□□ 1.08
CLSTN3-214ENST00000542663 PTPREP23469 700 aa21.78■■□□□ 1.08
CLSTN3-214ENST00000542663 TMEM57Q8N5G2 664 aa21.78■■□□□ 1.08
CLSTN3-214ENST00000542663 MIGA1Q8NAN2 632 aa21.78■■□□□ 1.08
CLSTN3-214ENST00000542663 EHD4Q9H223 541 aa21.78■■□□□ 1.08
CLSTN3-214ENST00000542663 BTBD7Q9P203 1132 aa21.78■■□□□ 1.08
CLSTN3-214ENST00000542663 SLC15A5A6NIM6 579 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 POTEB2H3BUK9 544 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 IGHA2P01877 340 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 VCAM1P19320 739 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 CCNA1P78396 465 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 ATP8B2P98198 1209 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 OS9Q13438 667 aaPredicted RBP21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 LBX2Q6XYB7 198 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 NPLOC4Q8TAT6 608 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 ACER1Q8TDN7 264 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 FEZ1Q99689 392 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 SENP6Q9GZR1 1112 aaPredicted RBP21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 KIAA1683Q9H0B3 1180 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 CWC22Q9HCG8 908 aaKnown RBP21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 SERPINB13Q9UIV8 391 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 PLXNA1Q9UIW2 1896 aa21.77■■□□□ 1.08
CLSTN3-214ENST00000542663 SMCHD1A6NHR9 2005 aa21.77■■□□□ 1.07
CLSTN3-214ENST00000542663 SURF6O75683 361 aaKnown RBP21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 HOXC6P09630 235 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 GRB14Q14449 540 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 RAB3GAP1Q15042 981 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 MFSD14CQ5VZR4 134 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 TRPV1Q8NER1 839 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 GUCD1Q96NT3 240 aa21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 DDX20Q9UHI6 824 aaKnown RBP21.76■■□□□ 1.07
CLSTN3-214ENST00000542663 BAZ2AQ9UIF9 1905 aaKnown RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 SPDYE16A6NNV3 312 aaPredicted RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 IDH1O75874 414 aaKnown RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 GLRX3O76003 335 aaKnown RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 USP5P45974 858 aa21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 USP14P54578 494 aa21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 WDR78Q5VTH9 848 aa21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 LPAR1Q92633 364 aa21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 EAF2Q96CJ1 260 aaPredicted RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 CCDC8Q9H0W5 538 aaPredicted RBP21.75■■□□□ 1.07
CLSTN3-214ENST00000542663 CYP2C19P33261 490 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 GUCY1A2P33402 732 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 SHMT1P34896 483 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 ABCB5Q2M3G0 1257 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 CERKLQ49MI3 558 aaPredicted RBP21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 FAM109BQ6ICB4 259 aaPredicted RBP21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 MAGEB6Q8N7X4 407 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 ANTXR1Q9H6X2 564 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 C1orf115Q9H7X2 142 aa21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 NOP58Q9Y2X3 529 aaKnown RBP21.74■■□□□ 1.07
CLSTN3-214ENST00000542663 CYBAP13498 195 aa21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 CNGA1P29973 690 aa21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 PLCD1P51178 756 aa21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 ATN1P54259 1190 aaPredicted RBP21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 ATP2B2Q01814 1243 aa21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 RPAP3Q9H6T3 665 aaPredicted RBP21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 IVNS1ABPQ9Y6Y0 642 aa21.73■■□□□ 1.07
CLSTN3-214ENST00000542663 CDH23Q9H251 3354 aa21.72■■□□□ 1.07
CLSTN3-214ENST00000542663 DNM1LO00429 736 aa21.72■■□□□ 1.07
CLSTN3-214ENST00000542663 MSCO60682 206 aa21.72■■□□□ 1.07
CLSTN3-214ENST00000542663 CERS3Q8IU89 383 aa21.72■■□□□ 1.07
CLSTN3-214ENST00000542663 COL25A1Q9BXS0 654 aaPredicted RBP21.72■■□□□ 1.07
CLSTN3-214ENST00000542663 VCANP13611 3396 aa21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 RTP1P59025 263 aa21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 EVX2Q03828 476 aa21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 TTC6Q86TZ1 520 aa21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 LBHD1Q9BQE6 289 aaPredicted RBP21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 RIOK1Q9BRS2 568 aaKnown RBP21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 PRUNE2Q8WUY3 3088 aa21.71■■□□□ 1.07
CLSTN3-214ENST00000542663 GABPAQ06546 454 aa21.7■■□□□ 1.06
CLSTN3-214ENST00000542663 ZKSCAN2Q63HK3 967 aa21.7■■□□□ 1.06
CLSTN3-214ENST00000542663 FAM161BQ96MY7 647 aa21.7■■□□□ 1.06
CLSTN3-214ENST00000542663 CABP5Q9NP86 173 aa21.7■■□□□ 1.06
CLSTN3-214ENST00000542663 MYH7P12883 1935 aa21.7■■□□□ 1.06
CLSTN3-214ENST00000542663 A0A1W2PRG0 241 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms