RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 LCMT1Q9UIC8 334 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 DENND2AQ9ULE3 1009 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 IQSEC3Q9UPP2 1182 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 RGPD3A6NKT7 1758 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 RGPD4Q7Z3J3 1758 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 GOLGA6L4A6NEF3 574 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 GSG1L2A8MUP6 293 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ST5P78524 1137 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 DDR1Q08345 913 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 PUS10Q3MIT2 529 aaKnown RBP9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 CHST3Q7LGC8 479 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 LCORLQ8N3X6 602 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 TNMDQ9H2S6 317 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 GPHNQ9NQX3 736 aaPredicted RBP9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 FAM53CQ9NYF3 392 aa9.12□□□□□ -0.95
PDLIM5-221ENST00000542407 ANKRD31Q8N7Z5 1873 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 MYO1CO00159 1063 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 JAK2O60674 1132 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 CLCN6P51797 869 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 GRAPQ13588 217 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF827Q17R98 1081 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 TRIM74Q86UV6 250 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 TRIM73Q86UV7 250 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 GOLGA6L1Q8N7Z2 621 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 GRAPLQ8TC17 118 aaPredicted RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 AIDAQ96BJ3 306 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ANKRD2Q9GZV1 360 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ARMT1Q9H993 441 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 FHOD1Q9Y613 1164 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 CHD4Q14839 1912 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 POLRMTO00411 1230 aaKnown RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF213O14771 459 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 PPFIA4O75335 1185 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 PNMA6AP0CW24 399 aaPredicted RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 PDIA3P30101 505 aaKnown RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ARHGAP29Q52LW3 1261 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF772Q68DY9 489 aaPredicted RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 CDC37L1Q7L3B6 337 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 FERMT3Q86UX7 667 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 TXNRD3Q86VQ6 643 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 TXLNBQ8N3L3 684 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 NSUN7Q8NE18 718 aaKnown RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 AKT1S1Q96B36 256 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF274Q96GC6 653 aaPredicted RBP9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 GOPCQ9HD26 462 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 SUGT1Q9Y2Z0 365 aa9.11□□□□□ -0.95
PDLIM5-221ENST00000542407 CCP110O43303 1012 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 PRKAB2O43741 272 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 MLLT3P42568 568 aaPredicted RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 PLA2G4AP47712 749 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 CAVIN4Q5BKX8 364 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 IFNL3Q8IZI9 196 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 KRI1Q8N9T8 703 aaKnown RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 LRRN4CLQ8ND94 238 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 SMARCE1Q969G3 411 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 LLPHQ9BRT6 129 aaKnown RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 DNAJC25Q9H1X3 360 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 ETAA1Q9NY74 926 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 NEDD4P46934 1319 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 KLRG2A4D1S0 409 aaPredicted RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 PLSCR1O15162 318 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 PRC1O43663 620 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 ZNF165P49910 485 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 TPM4P67936 248 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 TTC19Q6DKK2 380 aaPredicted RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 FAM173BQ6P4H8 233 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 LRRC8AQ8IWT6 810 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 NCOA7Q8NI08 942 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 RIOK1Q9BRS2 568 aaKnown RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 GNL3LQ9NVN8 582 aaKnown RBP9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 HPS5Q9UPZ3 1129 aa9.1□□□□□ -0.95
PDLIM5-221ENST00000542407 TCHHQ07283 1943 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 CAPN15O75808 1086 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 SERPINB2P05120 415 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 MAP2K2P36507 400 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 GPS2Q13227 327 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 TMCO3Q6UWJ1 677 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 CYB5R4Q7L1T6 521 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 CHCHD3Q9NX63 227 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 DACT1Q9NYF0 836 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 PNMA2Q9UL42 364 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 GOLGA6L19H0YKK7 550 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 PPFIA2O75334 1257 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 LONRF3Q496Y0 759 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 LARP1BQ659C4 914 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 FBXW7Q969H0 707 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 TMX4Q9H1E5 349 aaPredicted RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 TFCP2L1Q9NZI6 479 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 LRP2BPQ9P2M1 347 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 SUN2Q9UH99 717 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 SYNPO2Q9UMS6 1093 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 KINO60870 393 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 SEC31AO94979 1220 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 GNAT2P19087 354 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 C15orf52Q6ZUT6 534 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 PLA2G4DQ86XP0 818 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 MIGA1Q8NAN2 632 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 PRPF38AQ8NAV1 312 aaKnown RBP9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 TATDN2Q93075 761 aa9.09□□□□□ -0.95
PDLIM5-221ENST00000542407 CCDC34Q96HJ3 373 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms