RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RETREG1Q9H6L5 497 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 TPCN1Q9ULQ1 816 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 F8VZ95 297 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 NPHP1O15259 732 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 ONECUT3O60422 494 aaPredicted RBP12.59□□□□□ -0.39
CDH3-203ENST00000542274 ATP6V1G1O75348 118 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 SCARF1Q14162 830 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 SUSD4Q5VX71 490 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 PARP9Q8IXQ6 854 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 LRRC2Q9BYS8 371 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 TSPY26PQ9H489 355 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 CLIP2Q9UDT6 1046 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 ABCF2Q9UG63 623 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 ADAM21Q9UKJ8 722 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 N6AMT1Q9Y5N5 214 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 CYP46A1Q9Y6A2 500 aa12.59□□□□□ -0.39
CDH3-203ENST00000542274 CICQ96RK0 1608 aaPredicted RBP12.58□□□□□ -0.39
CDH3-203ENST00000542274 IRS4O14654 1257 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 MYO1BO43795 1136 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 CLNS1AP54105 237 aaKnown RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 STK3Q13188 491 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 CCDC57Q2TAC2 916 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 PREPLQ4J6C6 727 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 BICDL1Q6ZP65 573 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 SNRNP27Q8WVK2 155 aaKnown RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 KCNN1Q92952 543 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 SAAL1Q96ER3 474 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 GREM2Q9H772 168 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 ERVV-1B6SEH8 477 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 GADD45BO75293 160 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 HCLS1P14317 486 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 ZKSCAN1P17029 563 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 IL15P40933 162 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 TMEM62Q0P6H9 643 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 NYAP1Q6ZVC0 841 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 ZNF34Q8IZ26 560 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 POLR3CQ9BUI4 534 aaPredicted RBP12.58□□□□□ -0.4
CDH3-203ENST00000542274 UBXN6Q9BZV1 441 aa12.58□□□□□ -0.4
CDH3-203ENST00000542274 GNPATO15228 680 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 ZNF189O75820 626 aaPredicted RBP12.57□□□□□ -0.4
CDH3-203ENST00000542274 EIF4BP23588 611 aaKnown RBP12.57□□□□□ -0.4
CDH3-203ENST00000542274 FKBP4Q02790 459 aaKnown RBP eCLIP12.57□□□□□ -0.4
CDH3-203ENST00000542274 RNF20Q5VTR2 975 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 PAG1Q9NWQ8 432 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 SRP68Q9UHB9 627 aaKnown RBP12.57□□□□□ -0.4
CDH3-203ENST00000542274 NIP7Q9Y221 180 aaKnown RBP eCLIP12.57□□□□□ -0.4
CDH3-203ENST00000542274 TAF1LQ8IZX4 1826 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 SNAP23O00161 211 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 HIP1O00291 1037 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 SYT1P21579 422 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 SESN3P58005 492 aa12.57□□□□□ -0.4
CDH3-203ENST00000542274 RPS6KA5O75582 802 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 TRIM37O94972 964 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 IFIT1P09914 478 aaKnown RBP12.56□□□□□ -0.4
CDH3-203ENST00000542274 GJB2P29033 226 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 SCNN1BP51168 640 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 CDR1P51861 262 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 CDCA2Q69YH5 1023 aaPredicted RBP12.56□□□□□ -0.4
CDH3-203ENST00000542274 IQCA1Q86XH1 822 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 SAMD3Q8N6K7 520 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 KBTBD3Q8NAB2 608 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 ZKSCAN4Q969J2 545 aaPredicted RBP12.56□□□□□ -0.4
CDH3-203ENST00000542274 LY75O60449 1722 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 PPFIA3O75145 1194 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 KRT38O76015 456 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 STK10O94804 968 aaKnown RBP12.56□□□□□ -0.4
CDH3-203ENST00000542274 CYP21A2P08686 494 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 STIP1P31948 543 aaKnown RBP12.56□□□□□ -0.4
CDH3-203ENST00000542274 FAM81AQ8TBF8 368 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 EPAS1Q99814 870 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 CENPOQ9BU64 300 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 BCORQ6W2J9 1755 aa12.56□□□□□ -0.4
CDH3-203ENST00000542274 SFSWAPQ12872 951 aaKnown RBP12.55□□□□□ -0.4
CDH3-203ENST00000542274 TOB2Q14106 344 aaPredicted RBP12.55□□□□□ -0.4
CDH3-203ENST00000542274 KRT27Q7Z3Y8 459 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 TTLL11Q8NHH1 800 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 MKRN1Q9UHC7 482 aaKnown RBP12.55□□□□□ -0.4
CDH3-203ENST00000542274 CNPY2Q9Y2B0 182 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 ITGA6P23229 1130 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 LIG3P49916 1009 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 CTSWP56202 376 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 PKN1Q16512 942 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 BLOC1S2Q6QNY1 142 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 STOX1Q6ZVD7 989 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 KIRREL3Q8IZU9 778 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 XAGE2Q96GT9 111 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 LRRC4BQ9NT99 713 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 RTEL1Q9NZ71 1219 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 TCHHQ07283 1943 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 ZNF831Q5JPB2 1677 aa12.55□□□□□ -0.4
CDH3-203ENST00000542274 DEUP1Q05D60 604 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 IFIT5Q13325 482 aaKnown RBP12.54□□□□□ -0.4
CDH3-203ENST00000542274 DHX8Q14562 1220 aaKnown RBP12.54□□□□□ -0.4
CDH3-203ENST00000542274 MCMDC2Q4G0Z9 681 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 THEMIS2Q5TEJ8 643 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 USPL1Q5W0Q7 1092 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 FAM173BQ6P4H8 233 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 SPDL1Q96EA4 605 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 TM6SF1Q9BZW5 370 aa12.54□□□□□ -0.4
CDH3-203ENST00000542274 CDHR2Q9BYE9 1310 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms