RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 C1orf115Q9H7X2 142 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 SERPINB13Q9UIV8 391 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 RABGAP1Q9Y3P9 1069 aa18.81■□□□□ 0.6
RTN3-211ENST00000542238 MAGEA10P43363 369 aaPredicted RBP18.8■□□□□ 0.6
RTN3-211ENST00000542238 MAP3K12Q12852 859 aa18.8■□□□□ 0.6
RTN3-211ENST00000542238 RAB3GAP1Q15042 981 aa18.8■□□□□ 0.6
RTN3-211ENST00000542238 TMED8Q6PL24 325 aaPredicted RBP18.8■□□□□ 0.6
RTN3-211ENST00000542238 MAGEB6Q8N7X4 407 aa18.8■□□□□ 0.6
RTN3-211ENST00000542238 C12orf42Q96LP6 360 aa18.8■□□□□ 0.6
RTN3-211ENST00000542238 EHD4Q9H223 541 aa18.8■□□□□ 0.6
RTN3-211ENST00000542238 PFASO15067 1338 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 CCND3P30281 292 aaPredicted RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 MAP2K5Q13163 448 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 CCL14Q16627 93 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 CERKLQ49MI3 558 aaPredicted RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 WDR78Q5VTH9 848 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 ITPRIPQ8IWB1 547 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 TDHQ8IZJ6 230 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 EAF2Q96CJ1 260 aaPredicted RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 EDC3Q96F86 508 aaKnown RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 UBE2OQ9C0C9 1292 aaKnown RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 CABP5Q9NP86 173 aa18.79■□□□□ 0.6
RTN3-211ENST00000542238 TLR7Q9NYK1 1049 aaKnown RBP18.79■□□□□ 0.6
RTN3-211ENST00000542238 COL6A1P12109 1028 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 ABCB5Q2M3G0 1257 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 LRIT3Q3SXY7 679 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 MFSD14CQ5VZR4 134 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 LHX8Q68G74 356 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 CATSPERGQ6ZRH7 1159 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 KIAA1683Q9H0B3 1180 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 IVNS1ABPQ9Y6Y0 642 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 LAMA3Q16787 3333 aa18.78■□□□□ 0.6
RTN3-211ENST00000542238 FRMPD3Q5JV73 1810 aa18.77■□□□□ 0.6
RTN3-211ENST00000542238 SLC15A5A6NIM6 579 aa18.77■□□□□ 0.6
RTN3-211ENST00000542238 DLL1O00548 723 aa18.77■□□□□ 0.6
RTN3-211ENST00000542238 POTEEQ6S8J3 1075 aa18.77■□□□□ 0.6
RTN3-211ENST00000542238 DEFB123Q8N688 67 aa18.77■□□□□ 0.6
RTN3-211ENST00000542238 VCAM1P19320 739 aa18.76■□□□□ 0.59
RTN3-211ENST00000542238 ERC1Q8IUD2 1116 aa18.76■□□□□ 0.59
RTN3-211ENST00000542238 NDUFB9Q9Y6M9 179 aa18.76■□□□□ 0.59
RTN3-211ENST00000542238 CNMDO75829 334 aa18.75■□□□□ 0.59
RTN3-211ENST00000542238 POLR3DP05423 398 aaPredicted RBP18.75■□□□□ 0.59
RTN3-211ENST00000542238 PTPREP23469 700 aa18.75■□□□□ 0.59
RTN3-211ENST00000542238 ATP2B2Q01814 1243 aa18.75■□□□□ 0.59
RTN3-211ENST00000542238 LBX2Q6XYB7 198 aa18.75■□□□□ 0.59
RTN3-211ENST00000542238 ANTXR1Q9H6X2 564 aa18.75■□□□□ 0.59
RTN3-211ENST00000542238 MSCO60682 206 aa18.74■□□□□ 0.59
RTN3-211ENST00000542238 CNGA1P29973 690 aa18.74■□□□□ 0.59
RTN3-211ENST00000542238 TTF1Q15361 905 aaPredicted RBP18.74■□□□□ 0.59
RTN3-211ENST00000542238 LRRC26Q2I0M4 334 aa18.74■□□□□ 0.59
RTN3-211ENST00000542238 AACSQ86V21 672 aa18.74■□□□□ 0.59
RTN3-211ENST00000542238 ACER1Q8TDN7 264 aa18.74■□□□□ 0.59
RTN3-211ENST00000542238 NAV1Q8NEY1 1877 aa18.73■□□□□ 0.59
RTN3-211ENST00000542238 MAGEB6P1A0A0J9YX57 407 aa18.73■□□□□ 0.59
RTN3-211ENST00000542238 SHMT1P34896 483 aa18.73■□□□□ 0.59
RTN3-211ENST00000542238 PLCD1P51178 756 aa18.73■□□□□ 0.59
RTN3-211ENST00000542238 RPAP3Q9H6T3 665 aaPredicted RBP18.73■□□□□ 0.59
RTN3-211ENST00000542238 FLRT1Q9NZU1 646 aa18.73■□□□□ 0.59
RTN3-211ENST00000542238 DDX20Q9UHI6 824 aaKnown RBP18.73■□□□□ 0.59
RTN3-211ENST00000542238 COL6A3P12111 3177 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 HOXC6P09630 235 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 GRB14Q14449 540 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 HSP90AB4PQ58FF6 505 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 Q7L0L9 218 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 RIOK1Q9BRS2 568 aaKnown RBP18.72■□□□□ 0.59
RTN3-211ENST00000542238 CRNKL1Q9BZJ0 848 aaKnown RBP18.72■□□□□ 0.59
RTN3-211ENST00000542238 SENP6Q9GZR1 1112 aaPredicted RBP18.72■□□□□ 0.59
RTN3-211ENST00000542238 BTBD7Q9P203 1132 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 EXOC6BQ9Y2D4 811 aa18.72■□□□□ 0.59
RTN3-211ENST00000542238 SPDYE16A6NNV3 312 aaPredicted RBP18.71■□□□□ 0.59
RTN3-211ENST00000542238 MPHOSPH10O00566 681 aaKnown RBP18.71■□□□□ 0.59
RTN3-211ENST00000542238 RLBP1P12271 317 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 MDM2Q00987 491 aaPredicted RBP18.71■□□□□ 0.59
RTN3-211ENST00000542238 SEPT2Q15019 361 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 CEP85Q6P2H3 762 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 DPP9Q86TI2 863 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 LPAR1Q92633 364 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 LBHD1Q9BQE6 289 aaPredicted RBP18.71■□□□□ 0.59
RTN3-211ENST00000542238 MCM9Q9NXL9 1143 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 HOXC10Q9NYD6 342 aa18.71■□□□□ 0.59
RTN3-211ENST00000542238 MYH8P13535 1937 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 COG2Q14746 738 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 SLC9C2Q5TAH2 1124 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 TANGO6Q9C0B7 1094 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 PRKAG2Q9UGJ0 569 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 STXBP5LQ9Y2K9 1186 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 CUL9Q8IWT3 2517 aa18.7■□□□□ 0.58
RTN3-211ENST00000542238 STRNO43815 780 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 CYP2C19P33261 490 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 GUCY1A2P33402 732 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 GABPAQ06546 454 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 NPLOC4Q8TAT6 608 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 MTMR10Q9NXD2 777 aa18.69■□□□□ 0.58
RTN3-211ENST00000542238 DNM1LO00429 736 aa18.68■□□□□ 0.58
RTN3-211ENST00000542238 PDE6AP16499 860 aa18.68■□□□□ 0.58
RTN3-211ENST00000542238 ATN1P54259 1190 aaPredicted RBP18.68■□□□□ 0.58
RTN3-211ENST00000542238 ARRDC4Q8NCT1 418 aa18.68■□□□□ 0.58
RTN3-211ENST00000542238 MOV10L1Q9BXT6 1211 aaKnown RBP18.68■□□□□ 0.58
RTN3-211ENST00000542238 IL1RAPL2Q9NP60 686 aa18.68■□□□□ 0.58
RTN3-211ENST00000542238 SLC5A4Q9NY91 659 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms