RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 MPHOSPH10O00566 681 aaKnown RBP12.47□□□□□ -0.41
CDCA3-208ENST00000540683 MBD4O95243 580 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 GJB1P08034 283 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 FLT3LGP49771 235 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 HERVK_113P62684 666 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 PRKCZQ05513 592 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 C20orf194Q5TEA3 1177 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 KBTBD3Q8NAB2 608 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 LPAR1Q92633 364 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 NACAP1Q9BZK3 213 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 RABGAP1Q9Y3P9 1069 aa12.47□□□□□ -0.41
CDCA3-208ENST00000540683 TNRC18O15417 2968 aaPredicted RBP12.47□□□□□ -0.41
CDCA3-208ENST00000540683 SIPA1L1O43166 1804 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 SLC3A2P08195 630 aaKnown RBP12.46□□□□□ -0.41
CDCA3-208ENST00000540683 PPP4R3BQ5MIZ7 849 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 LCORLQ8N3X6 602 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 MB21D1Q8N884 522 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 SH3TC2Q8TF17 1288 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 NUDT12Q9BQG2 462 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 HTATIP2Q9BUP3 242 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 RNF208Q9H0X6 261 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 HOXC10Q9NYD6 342 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 SLC4A4Q9Y6R1 1079 aa12.46□□□□□ -0.41
CDCA3-208ENST00000540683 MYH8P13535 1937 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 POTEFA5A3E0 1075 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 HMGCRP04035 888 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 XRCC5P13010 732 aaKnown RBP12.45□□□□□ -0.42
CDCA3-208ENST00000540683 SHMT1P34896 483 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 GJA8P48165 433 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 PLCD1P51178 756 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 GABPAQ06546 454 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 CCDC84Q86UT8 332 aaPredicted RBP12.45□□□□□ -0.42
CDCA3-208ENST00000540683 APPBP2Q92624 585 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 ARMT1Q9H993 441 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 KANSL2Q9H9L4 492 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 IVNS1ABPQ9Y6Y0 642 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 CENPFP49454 3210 aa12.45□□□□□ -0.42
CDCA3-208ENST00000540683 RNF113AO15541 343 aaKnown RBP12.44□□□□□ -0.42
CDCA3-208ENST00000540683 CCL5P13501 91 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 ERVK-9P63128 1117 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 ERVK-24P63145 666 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 RRP1BQ14684 758 aaKnown RBP12.44□□□□□ -0.42
CDCA3-208ENST00000540683 C12orf60Q5U649 245 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 LBX2Q6XYB7 198 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 SDR42E1Q8WUS8 393 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 GOPCQ9HD26 462 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 SLC5A4Q9NY91 659 aa12.44□□□□□ -0.42
CDCA3-208ENST00000540683 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.44□□□□□ -0.42
CDCA3-208ENST00000540683 DDX60LQ5H9U9 1706 aaKnown RBP12.44□□□□□ -0.42
CDCA3-208ENST00000540683 SMARCA5O60264 1052 aaPredicted RBP12.43□□□□□ -0.42
CDCA3-208ENST00000540683 SLURP2P0DP57 97 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 VCAM1P19320 739 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 EN2P19622 333 aaPredicted RBP12.43□□□□□ -0.42
CDCA3-208ENST00000540683 MX1P20591 662 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 RGS2P41220 211 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 ICA1Q05084 483 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 SBK1Q52WX2 424 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 CATSPERGQ6ZRH7 1159 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 C16orf86Q6ZW13 317 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 P2RX7Q99572 595 aaKnown RBP12.43□□□□□ -0.42
CDCA3-208ENST00000540683 RWDD1Q9H446 243 aaPredicted RBP12.43□□□□□ -0.42
CDCA3-208ENST00000540683 MKNK2Q9HBH9 465 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 EMILIN3Q9NT22 766 aa12.43□□□□□ -0.42
CDCA3-208ENST00000540683 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 USP17L21D6R901 530 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 STRNO43815 780 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 APPP05067 770 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 INHAP05111 366 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 CTGFP29279 349 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 COPB2P35606 906 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 TDO2P48775 406 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 CDK8P49336 464 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 CAP1Q01518 475 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 HDAC1Q13547 482 aaPredicted RBP12.42□□□□□ -0.42
CDCA3-208ENST00000540683 COG2Q14746 738 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 ZYXQ15942 572 aaKnown RBP12.42□□□□□ -0.42
CDCA3-208ENST00000540683 PLEKHH3Q7Z736 793 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 ANKLE1Q8NAG6 615 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 STRBPQ96SI9 672 aaKnown RBP12.42□□□□□ -0.42
CDCA3-208ENST00000540683 PAGR1Q9BTK6 254 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 FSD1Q9BTV5 496 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 TANGO6Q9C0B7 1094 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 HMX1Q9NP08 348 aaPredicted RBP12.42□□□□□ -0.42
CDCA3-208ENST00000540683 SYNPO2Q9UMS6 1093 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 NR2E3Q9Y5X4 410 aa12.42□□□□□ -0.42
CDCA3-208ENST00000540683 RPTORQ8N122 1335 aa12.41□□□□□ -0.42
CDCA3-208ENST00000540683 WDR46O15213 610 aaKnown RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 SGPL1O95470 568 aa12.41□□□□□ -0.42
CDCA3-208ENST00000540683 MYCP01106 439 aaPredicted RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 TFRCP02786 760 aaKnown RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 ZKSCAN1P17029 563 aaPredicted RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 PDE4BQ07343 736 aa12.41□□□□□ -0.42
CDCA3-208ENST00000540683 SEPT2Q15019 361 aa12.41□□□□□ -0.42
CDCA3-208ENST00000540683 ZNF444Q8N0Y2 327 aaPredicted RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 U2AF1L4Q8WU68 220 aaKnown RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 EDC3Q96F86 508 aaKnown RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 RPAP3Q9H6T3 665 aaPredicted RBP12.41□□□□□ -0.42
CDCA3-208ENST00000540683 GABRQQ9UN88 632 aa12.41□□□□□ -0.42
CDCA3-208ENST00000540683 TMX2Q9Y320 296 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms