RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TULP1O00294 542 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-213ENST00000540338 IKBKBO14920 756 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 WDHD1O75717 1129 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-213ENST00000540338 PLEKHA8P1O95397 391 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 NT5C2P49902 561 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 STX17P56962 302 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 GTF2IP78347 998 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 PLA2G4DQ86XP0 818 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 MYRIPQ8NFW9 859 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 EYA3Q99504 573 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 NFE2L3Q9Y4A8 694 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 SRPRBQ9Y5M8 271 aaKnown RBP12.24□□□□□ -0.45
CLIP1-213ENST00000540338 RGL2O15211 777 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 CYP2D6P10635 497 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 PTPREP23469 700 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 LONRF3Q496Y0 759 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 BLIDQ8IZY5 108 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 CPLX3Q8WVH0 158 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 CALML4Q96GE6 196 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 CSRNP2Q9H175 543 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 ANAPC4Q9UJX5 808 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 AMPD3Q01432 767 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 C3orf67Q6ZVT6 689 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 TMTC3Q6ZXV5 915 aa12.24□□□□□ -0.45
CLIP1-213ENST00000540338 CACTINQ8WUQ7 758 aaKnown RBP12.24□□□□□ -0.45
CLIP1-213ENST00000540338 ORC4O43929 436 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 PDCL2Q8N4E4 241 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 TRIML1Q8N9V2 468 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.23□□□□□ -0.45
CLIP1-213ENST00000540338 BMP2KQ9NSY1 1161 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-213ENST00000540338 SPAG1Q07617 926 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 IQCB1Q15051 598 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 DGKHQ86XP1 1220 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 N4BP2Q86UW6 1770 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-213ENST00000540338 N4BP3O15049 544 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 FOXP2O15409 715 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 PTGDRQ13258 359 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 PPP4R3BQ5MIZ7 849 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 SHC4Q6S5L8 630 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 ARGLU1Q9NWB6 273 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-213ENST00000540338 TRAPPC10P48553 1259 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 DPP8Q6V1X1 898 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-213ENST00000540338 DYNLL2Q96FJ2 89 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 NBPF3Q9H094 633 aa12.23□□□□□ -0.45
CLIP1-213ENST00000540338 AFF2P51816 1311 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 SPATA31A6Q5VVP1 1343 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 OXER1Q8TDS5 423 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 RIOK1Q9BRS2 568 aaKnown RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 ZNHIT6Q9NWK9 470 aaKnown RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 TMOD2Q9NZR1 351 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 GOLGA6L9A6NEM1 432 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 NTRK3Q16288 839 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 AXDND1Q5T1B0 1012 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 SAMD1Q6SPF0 538 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 ILDR1Q86SU0 546 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 GPR101Q96P66 508 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 FANCLQ9NW38 375 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 COL14A1Q05707 1796 aaKnown RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 TRIM37O94972 964 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 TUBB4AP04350 444 aa12.22□□□□□ -0.45
CLIP1-213ENST00000540338 SSBP05455 408 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 ZNF579Q8NAF0 562 aaKnown RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 SH3RF3Q8TEJ3 882 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-213ENST00000540338 KLRF2D3W0D1 207 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 IGSF3O75054 1194 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 LETM2Q2VYF4 491 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 TMC4Q7Z404 712 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 SYMPKQ92797 1274 aaKnown RBP12.21□□□□□ -0.45
CLIP1-213ENST00000540338 GPKOWQ92917 476 aaPredicted RBP eCLIP12.21□□□□□ -0.45
CLIP1-213ENST00000540338 BPIFA3Q9BQP9 254 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 ADAMTS7Q9UKP4 1686 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 NMT2O60551 498 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 KRT18P05783 430 aaKnown RBP12.21□□□□□ -0.45
CLIP1-213ENST00000540338 KLRK1P26718 216 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 ALDH1B1P30837 517 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 ADGRA1Q86SQ6 560 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 CD209Q9NNX6 404 aa12.21□□□□□ -0.45
CLIP1-213ENST00000540338 RIOK3O14730 519 aaKnown RBP12.21□□□□□ -0.46
CLIP1-213ENST00000540338 PLCD1P51178 756 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 ZNF827Q17R98 1081 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 SBK1Q52WX2 424 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 GALNT17Q6IS24 598 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 KRT25Q7Z3Z0 450 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 NLGN1Q8N2Q7 840 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 ATRNO75882 1429 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 URI1O94763 535 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-213ENST00000540338 DHX40Q8IX18 779 aaKnown RBP12.21□□□□□ -0.46
CLIP1-213ENST00000540338 TRMT44Q8IYL2 757 aaKnown RBP12.21□□□□□ -0.46
CLIP1-213ENST00000540338 STAMQ92783 540 aa12.21□□□□□ -0.46
CLIP1-213ENST00000540338 SIPA1L3O60292 1781 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-213ENST00000540338 NONOQ15233 471 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLIP1-213ENST00000540338 NUP88Q99567 741 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-213ENST00000540338 PSMA7O14818 248 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 KRT27Q7Z3Y8 459 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.2□□□□□ -0.46
CLIP1-213ENST00000540338 TTF2Q9UNY4 1162 aaKnown RBP12.2□□□□□ -0.46
CLIP1-213ENST00000540338 LAMB4A4D0S4 1761 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 GOLGA8HP0CJ92 632 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 ARHGAP29Q52LW3 1261 aa12.2□□□□□ -0.46
CLIP1-213ENST00000540338 WWC2Q6AWC2 1192 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms