RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 TRIM28Q13263 835 aaKnown RBP23.09■■□□□ 1.29
TMEM260-203ENST00000539559 TTF1Q15361 905 aaPredicted RBP23.09■■□□□ 1.29
TMEM260-203ENST00000539559 NOM1Q5C9Z4 860 aaKnown RBP23.09■■□□□ 1.29
TMEM260-203ENST00000539559 PPFIBP1Q86W92 1011 aa23.09■■□□□ 1.29
TMEM260-203ENST00000539559 TRIM22Q8IYM9 498 aa23.09■■□□□ 1.29
TMEM260-203ENST00000539559 RHOXF2Q9BQY4 288 aa23.09■■□□□ 1.29
TMEM260-203ENST00000539559 DACH1Q9UI36 760 aa23.09■■□□□ 1.29
TMEM260-203ENST00000539559 FBXO3Q9UK99 471 aa23.09■■□□□ 1.29
TMEM260-203ENST00000539559 ANKRD18BA2A2Z9 1011 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 ATP8B1O43520 1251 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 LIFRP42702 1097 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 RILPL1Q5EBL4 403 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 MIGA1Q8NAN2 632 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 PDE11AQ9HCR9 933 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 ADAM21Q9UKJ8 722 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 PATL2C9JE40 543 aaKnown RBP23.08■■□□□ 1.29
TMEM260-203ENST00000539559 PDE8BO95263 885 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 AKNAD1Q5T1N1 836 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 MFSD6Q6ZSS7 791 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 VPS54Q9P1Q0 977 aa23.08■■□□□ 1.29
TMEM260-203ENST00000539559 SRPRBQ9Y5M8 271 aaKnown RBP23.08■■□□□ 1.29
TMEM260-203ENST00000539559 FXR1P51114 621 aaKnown RBP eCLIP23.07■■□□□ 1.28
TMEM260-203ENST00000539559 WTAPQ15007 396 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 SRGAP1Q7Z6B7 1085 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 MAP3K15Q6ZN16 1313 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 STK36Q9NRP7 1315 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 GSG1L2A8MUP6 293 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 UBAP1LF5GYI3 381 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 TDO2P48775 406 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 DPYDQ12882 1025 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 KIF4BQ2VIQ3 1234 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 TXLNBQ8N3L3 684 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 CRACR2BQ8N4Y2 399 aaPredicted RBP23.07■■□□□ 1.28
TMEM260-203ENST00000539559 SYNRGQ9UMZ2 1314 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 SLIT2O94813 1529 aa23.07■■□□□ 1.28
TMEM260-203ENST00000539559 CTSWP56202 376 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 ZSCAN26Q16670 478 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 BARGINQ6ZT62 677 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 SLC35F6Q8N357 371 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 LCORLQ8N3X6 602 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 ABCC12Q96J65 1359 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 RNF225M0QZC1 329 aaPredicted RBP23.06■■□□□ 1.28
TMEM260-203ENST00000539559 FOXP1Q9H334 677 aaPredicted RBP23.06■■□□□ 1.28
TMEM260-203ENST00000539559 LCMT1Q9UIC8 334 aa23.06■■□□□ 1.28
TMEM260-203ENST00000539559 IRS4O14654 1257 aaPredicted RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 KIF5CO60282 957 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 NLRP10Q86W26 655 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 WASF1Q92558 559 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 PLA2G12BQ9BX93 195 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 VPS18Q9P253 973 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 ATRNO75882 1429 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 RASGRF1Q13972 1273 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 GIGYF2Q6Y7W6 1299 aaKnown RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 PANX2Q96RD6 677 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 ADD3Q9UEY8 706 aaKnown RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 CCDC151A5D8V7 595 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 MARCH10Q8NA82 808 aaPredicted RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 SPATA5Q8NB90 893 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 SYMPKQ92797 1274 aaKnown RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 PAGE5Q96GU1 130 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 BLZF1Q9H2G9 400 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 ABCB6Q9NP58 842 aa23.05■■□□□ 1.28
TMEM260-203ENST00000539559 TRMT112Q9UI30 125 aaKnown RBP23.05■■□□□ 1.28
TMEM260-203ENST00000539559 A0A0G2JS52 829 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 GYPCP04921 128 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 SPATA1Q5VX52 437 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 SPATA20Q8TB22 786 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 CDC23Q9UJX2 597 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 SLC4A4Q9Y6R1 1079 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 DOT1LQ8TEK3 1739 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 MFAP3LO75121 409 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 CUL4BQ13620 913 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 BEND6Q5SZJ8 279 aaPredicted RBP23.04■■□□□ 1.28
TMEM260-203ENST00000539559 RNF216Q9NWF9 866 aaPredicted RBP23.04■■□□□ 1.28
TMEM260-203ENST00000539559 IQSEC3Q9UPP2 1182 aaPredicted RBP23.04■■□□□ 1.28
TMEM260-203ENST00000539559 CTNND2Q9UQB3 1225 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 ZBTB1Q9Y2K1 713 aa23.04■■□□□ 1.28
TMEM260-203ENST00000539559 DEXIO95424 95 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 ERCC5P28715 1186 aaPredicted RBP23.03■■□□□ 1.28
TMEM260-203ENST00000539559 GPS2Q13227 327 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 ELOA2Q8IYF1 753 aaPredicted RBP23.03■■□□□ 1.28
TMEM260-203ENST00000539559 TRIML1Q8N9V2 468 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 FANCBQ8NB91 859 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 RGS22Q8NE09 1264 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 MAP2K7O14733 419 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 PHACTR2O75167 634 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 ARID4AP29374 1257 aaPredicted RBP23.03■■□□□ 1.28
TMEM260-203ENST00000539559 ZNF174Q15697 407 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 JAKMIP3Q5VZ66 844 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 ZNF654Q8IZM8 581 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 VPS16Q9H269 839 aa23.03■■□□□ 1.28
TMEM260-203ENST00000539559 FEZ2Q9UHY8 353 aaPredicted RBP23.03■■□□□ 1.28
TMEM260-203ENST00000539559 MINDY4BA8MYZ0 360 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 TRIM66O15016 1216 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 ACSBG1Q96GR2 724 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 PBX1P40424 430 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 VSNL1P62760 191 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 ERVK-24P63145 666 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 MAPK8IP1Q9UQF2 711 aa23.02■■□□□ 1.28
TMEM260-203ENST00000539559 MYH8P13535 1937 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms