RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 NCAPH2Q6IBW4 605 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 TMTC1Q8IUR5 882 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 ELOA2Q8IYF1 753 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 CRACR2BQ8N4Y2 399 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 MIGA1Q8NAN2 632 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 PAGE5Q96GU1 130 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 EPB41L4AQ9HCS5 686 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 RIPOR2Q9Y4F9 1068 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 PRDM1O75626 825 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 KRT9P35527 623 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 TSR1Q2NL82 804 aaKnown RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 NOM1Q5C9Z4 860 aaKnown RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 RASGRP2Q7LDG7 609 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 ZNF579Q8NAF0 562 aaKnown RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 TTLL11Q8NHH1 800 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 L1RE1Q9UN81 338 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 SNAP23O00161 211 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 GYPCP04921 128 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 ATF3P18847 181 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 ZBTB38Q8NAP3 1195 aaPredicted RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 FANCBQ8NB91 859 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 NOA1Q8NC60 698 aaKnown RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 CCDC148Q8NFR7 591 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 GDAP1L1Q96MZ0 367 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 PSD3Q9NYI0 1048 aa12.74□□□□□ -0.37
SYNE1-237ENST00000539504 TRMT112Q9UI30 125 aaKnown RBP12.74□□□□□ -0.37
SYNE1-237ENST00000539504 UQCRFS1P1P0C7P4 283 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 TUBB2AQ13885 445 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 SRLQ86TD4 932 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 ZNF654Q8IZM8 581 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 HNRNPLLQ8WVV9 542 aaKnown RBP12.73□□□□□ -0.37
SYNE1-237ENST00000539504 TUBB2BQ9BVA1 445 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 A0A087X0B3 334 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 ANKRD65E5RJM6 399 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 SLC20A2Q08357 652 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 WHAMMP3Q1A5X7 153 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 RASSF8Q8NHQ8 419 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 CAPZA3Q96KX2 299 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 MYO6Q9UM54 1294 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 SLIT3O75094 1523 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 ENC1O14682 589 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 CYP26C1Q6V0L0 522 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 MSANTD4Q8NCY6 345 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 PLEKHA4Q9H4M7 779 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 STRN4Q9NRL3 753 aa12.73□□□□□ -0.37
SYNE1-237ENST00000539504 IRS4O14654 1257 aaPredicted RBP12.72□□□□□ -0.37
SYNE1-237ENST00000539504 PDE8BO95263 885 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 KRT31Q15323 416 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 CAGE1Q8TC20 777 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 BRMS1Q9HCU9 246 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 RAB21Q9UL25 225 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 KRT2P35908 639 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 UBXN1Q04323 297 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 FOXR1Q6PIV2 292 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 DNAJC10Q8IXB1 793 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 CCDC51Q96ER9 411 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 TUBB4BP68371 445 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 SPATA5Q8NB90 893 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 FAM204AQ9H8W3 233 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 LRP2BPQ9P2M1 347 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 V9GY48 417 aaPredicted RBP12.72□□□□□ -0.37
SYNE1-237ENST00000539504 ABCC12Q96J65 1359 aa12.72□□□□□ -0.37
SYNE1-237ENST00000539504 CSF1RP07333 972 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 ERVK-24P63145 666 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 CUL4BQ13620 913 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 TMTC2Q8N394 836 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 GSDMAQ96QA5 445 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 ABHD10Q9NUJ1 306 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 AATFQ9NY61 560 aaKnown RBP eCLIP12.71□□□□□ -0.37
SYNE1-237ENST00000539504 PCDH11XQ9BZA7 1347 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 PCDH11YQ9BZA8 1340 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 USP5P45974 858 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 APTXQ7Z2E3 356 aaKnown RBP12.71□□□□□ -0.37
SYNE1-237ENST00000539504 FAM71BQ8TC56 605 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 PRDM11Q9NQV5 511 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 TRIM10Q9UDY6 481 aa12.71□□□□□ -0.37
SYNE1-237ENST00000539504 COPB1P53618 953 aaKnown RBP12.71□□□□□ -0.38
SYNE1-237ENST00000539504 CTSWP56202 376 aa12.71□□□□□ -0.38
SYNE1-237ENST00000539504 LCORLQ8N3X6 602 aa12.71□□□□□ -0.38
SYNE1-237ENST00000539504 IQSEC3Q9UPP2 1182 aaPredicted RBP12.71□□□□□ -0.38
SYNE1-237ENST00000539504 ARFGEF2Q9Y6D5 1785 aa12.71□□□□□ -0.38
SYNE1-237ENST00000539504 SIPA1L3O60292 1781 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 GSG1L2A8MUP6 293 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 ERVV-2B6SEH9 535 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 PPP1R3GB7ZBB8 358 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 ZMYND10O75800 440 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 CDKAL1Q5VV42 579 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 KIAA1328Q86T90 577 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 RNF41Q9H4P4 317 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 TMOD3Q9NYL9 352 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 HDAC6Q9UBN7 1215 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 TACC3Q9Y6A5 838 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 LRRIQ3A6PVS8 624 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 ALX1Q15699 326 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 HLFQ16534 295 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 PCMTD1Q96MG8 357 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 CHP1Q99653 195 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 EPN1Q9Y6I3 576 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 MAP3K15Q6ZN16 1313 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 KCNJ18B7U540 433 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms