RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 SPTBN2O15020 2390 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 USP17L5A8MUK1 530 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 GOLGA6L22H0YM25 854 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 JAK2O60674 1132 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 ZBED4O75132 1171 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 KRT18P05783 430 aaKnown RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 EIF2AK2P19525 551 aaKnown RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 AK2P54819 239 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 VGLL4Q14135 290 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 HOOK2Q96ED9 719 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 AIFM3Q96NN9 605 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 AS3MTQ9HBK9 375 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 ATP8A2Q9NTI2 1148 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 FGFR2P21802 821 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 KIF5BP33176 963 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 BRPF1P55201 1214 aaPredicted RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 C1QTNF8P60827 252 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 IGBP1P78318 339 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 RAD51AP2Q09MP3 1159 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 DHX37Q8IY37 1157 aaKnown RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 C8orf76Q96K31 380 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 RPAP3Q9H6T3 665 aaPredicted RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 POLD4Q9HCU8 107 aa8.38□□□□□ -1.07
MSH6-209ENST00000538136 ARPP21Q9UBL0 812 aaPredicted RBP8.38□□□□□ -1.07
MSH6-209ENST00000538136 TMEM88BA6NKF7 163 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 KIF23Q02241 960 aaPredicted RBP8.37□□□□□ -1.07
MSH6-209ENST00000538136 SSRP1Q08945 709 aaKnown RBP8.37□□□□□ -1.07
MSH6-209ENST00000538136 KCTD2Q14681 263 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 LDHDQ86WU2 507 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 MRC1P22897 1456 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 SPDYE3A6NKU9 549 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 PGK2P07205 417 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 LETM2Q2VYF4 491 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 FAM151AQ8WW52 585 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 FERMT2Q96AC1 680 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 ZIC5Q96T25 663 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 SENP2Q9HC62 589 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 TSHZ2Q9NRE2 1034 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 SERPINA10Q9UK55 444 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 ALS2Q96Q42 1657 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 DHX32Q7L7V1 743 aaKnown RBP8.37□□□□□ -1.07
MSH6-209ENST00000538136 SH2D3AQ9BRG2 576 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 BACH2Q9BYV9 841 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 PHRF1Q9P1Y6 1649 aaKnown RBP8.37□□□□□ -1.07
MSH6-209ENST00000538136 A0A0C4DFX4 3053 aa8.37□□□□□ -1.07
MSH6-209ENST00000538136 PRRC2BQ5JSZ5 2229 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 RPS12P25398 132 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 SNRNP48Q6IEG0 339 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 FOXP4Q8IVH2 680 aaPredicted RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 ALG1Q9BT22 464 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 DHX36Q9H2U1 1008 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 KANSL2Q9H9L4 492 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 GPR108Q9NPR9 543 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 PCDHA1Q9Y5I3 950 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 CICQ96RK0 1608 aaPredicted RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 ISM2Q6H9L7 571 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 DPF2Q92785 391 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 CDK5RAP3Q96JB5 506 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 SH2D4AQ9H788 454 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 CNNM2Q9H8M5 875 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 GOPCQ9HD26 462 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 SNX14Q9Y5W7 946 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 RBAK-RBAKDNI3L0D1 243 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 BMP3P12645 472 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 ME1P48163 572 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 CDR1P51861 262 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 UTP14CQ5TAP6 766 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 ZNF654Q8IZM8 581 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 ATG4CQ96DT6 458 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 RRP36Q96EU6 259 aaKnown RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 PIGSQ96S52 555 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 EPB41L4AQ9HCS5 686 aaPredicted RBP8.36□□□□□ -1.07
MSH6-209ENST00000538136 PODXL2Q9NZ53 605 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 RTL9Q8NET4 1388 aa8.36□□□□□ -1.07
MSH6-209ENST00000538136 NEDD4P46934 1319 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 FAM170AA1A519 330 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 ARID4AP29374 1257 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 MARCKSP29966 332 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 STK38Q15208 465 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 SPECC1Q5M775 1068 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 SLC30A10Q6XR72 485 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 VGLL2Q8N8G2 317 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 RNF169Q8NCN4 708 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 ZNF280CQ8ND82 737 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 C7orf43Q8WVR3 580 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 ZSCAN10Q96SZ4 725 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 RTFDC1Q9BY42 306 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 PRDM5Q9NQX1 630 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 FAM198AQ9UFP1 575 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 MED23Q9ULK4 1368 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 UBE2SQ16763 222 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 STAG2Q8N3U4 1231 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 AKAP12Q02952 1782 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 TTLL1O95922 423 aa8.35□□□□□ -1.07
MSH6-209ENST00000538136 MATR3P43243 847 aaKnown RBP eCLIP8.35□□□□□ -1.07
MSH6-209ENST00000538136 USP50Q70EL3 339 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 TRPM3Q9HCF6 1732 aaPredicted RBP8.35□□□□□ -1.07
MSH6-209ENST00000538136 USP17L15C9J2P7 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L13C9JLJ4 530 aa8.34□□□□□ -1.07
MSH6-209ENST00000538136 USP17L11C9JVI0 530 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms