RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 HERC5Q9UII4 1024 aaKnown RBP11.46□□□□□ -0.58
USP28-205ENST00000537706 DENND2AQ9ULE3 1009 aa11.46□□□□□ -0.58
USP28-205ENST00000537706 SALL1Q9NSC2 1324 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 PHIPQ8WWQ0 1821 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 NPM3O75607 178 aaKnown RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 MAP4K4O95819 1239 aaPredicted RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 FAAP100Q0VG06 881 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 TWISTNBQ3B726 338 aaPredicted RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 ZNF365Q70YC5 407 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 STARD7Q9NQZ5 370 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 GAKO14976 1311 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 A0A1W2PQ45 241 aaPredicted RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 A0A1W2PQY0 241 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 FAM196BA6NMK8 535 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L15C9J2P7 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L13C9JLJ4 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L11C9JVI0 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L18D6R9N7 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L22D6RA61 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L17D6RBQ6 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L19D6RCP7 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L20D6RJB6 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 TLR3O15455 904 aaKnown RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 SSTR3P32745 418 aaPredicted RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 BTDP43251 543 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 USP17L24Q0WX57 530 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 SPTY2D1Q68D10 685 aaPredicted RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 LPIN2Q92539 896 aa11.45□□□□□ -0.58
USP28-205ENST00000537706 DDX4Q9NQI0 724 aaKnown RBP11.45□□□□□ -0.58
USP28-205ENST00000537706 RFX7Q2KHR2 1363 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 SEMA3EO15041 775 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 STRNO43815 780 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 FGBP02675 491 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 SLURP2P0DP57 97 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 POU3F3P20264 500 aaPredicted RBP11.44□□□□□ -0.58
USP28-205ENST00000537706 LRRC24Q50LG9 513 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 FAM47AQ5JRC9 791 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 KHSRPQ92945 711 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP28-205ENST00000537706 TSEN34Q9BSV6 310 aaKnown RBP11.44□□□□□ -0.58
USP28-205ENST00000537706 NRBP1Q9UHY1 535 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 PCDHA11Q9Y5I1 949 aa11.44□□□□□ -0.58
USP28-205ENST00000537706 RALBP1Q15311 655 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 BEND3Q5T5X7 828 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 GJD3Q8N144 294 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 IL23AQ9NPF7 189 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 YBX2Q9Y2T7 364 aaKnown RBP11.43□□□□□ -0.58
USP28-205ENST00000537706 MTCH2Q9Y6C9 303 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 MUC6Q6W4X9 2439 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 ACRP10323 421 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 CSF2RAP15509 400 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 VGLL2Q8N8G2 317 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 MFSD14AQ96MC6 490 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 TBX21Q9UL17 535 aa11.43□□□□□ -0.58
USP28-205ENST00000537706 ALDH1L1O75891 902 aa11.42□□□□□ -0.58
USP28-205ENST00000537706 FGFR2P21802 821 aa11.42□□□□□ -0.58
USP28-205ENST00000537706 ADORA2AP29274 412 aa11.42□□□□□ -0.58
USP28-205ENST00000537706 FAM163AQ96GL9 167 aaPredicted RBP11.42□□□□□ -0.58
USP28-205ENST00000537706 FEZ1Q99689 392 aa11.42□□□□□ -0.58
USP28-205ENST00000537706 NCOR1O75376 2440 aa11.42□□□□□ -0.58
USP28-205ENST00000537706 MOXD2PA6NHM9 499 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 CNMDO75829 334 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 LDHCP07864 332 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 USP14P54578 494 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 C16orf59Q7L2K0 433 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 SLC4A7Q9Y6M7 1214 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 MROH7-TTC4A0A0A0MT08 1334 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 LRRC37A2A6NM11 1700 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 PTPN5P54829 565 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 GSTO1P78417 241 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 CRACR2BQ8N4Y2 399 aaPredicted RBP11.41□□□□□ -0.58
USP28-205ENST00000537706 VTI1AQ96AJ9 217 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 SUCLG2Q96I99 432 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 PRRX2Q99811 253 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 DHX36Q9H2U1 1008 aaKnown RBP11.41□□□□□ -0.58
USP28-205ENST00000537706 PI4KBQ9UBF8 816 aa11.41□□□□□ -0.58
USP28-205ENST00000537706 PLXNA1Q9UIW2 1896 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 DCXO43602 365 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 IGHA2P01877 340 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 PRAMEF19Q5SWL8 479 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 GLT1D1Q96MS3 346 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 NOL10Q9BSC4 688 aaKnown RBP11.4□□□□□ -0.58
USP28-205ENST00000537706 PPP1R12CQ9BZL4 782 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 ABCF2Q9UG63 623 aa11.4□□□□□ -0.58
USP28-205ENST00000537706 PGK1P00558 417 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 TMEM67Q5HYA8 995 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 LBX2Q6XYB7 198 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 SRCIN1Q9C0H9 1055 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 EMILIN3Q9NT22 766 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 GPR75-ASB3A0A0A6YYF3 556 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 ZBBXA8MT70 800 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 F6X3S4 739 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 AKR1A1P14550 325 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 ACLYP53396 1101 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 RABGGTBP53611 331 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 CATSPERGQ6ZRH7 1159 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 ERICH6Q7L0X2 663 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 RPUSD2Q8IZ73 545 aaKnown RBP11.39□□□□□ -0.59
USP28-205ENST00000537706 SHCBP1Q8NEM2 672 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 C12orf42Q96LP6 360 aa11.39□□□□□ -0.59
USP28-205ENST00000537706 ADAMTS8Q9UP79 889 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms