RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 PLCD1P51178 756 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 ERVK-9P63128 1117 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 ERVK-24P63145 666 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 USP17L24Q0WX57 530 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 C12orf42Q96LP6 360 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 KIAA1683Q9H0B3 1180 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 TXNRD2Q9NNW7 524 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 PAG1Q9NWQ8 432 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 GJD2Q9UKL4 321 aa16.84■□□□□ 0.29
SYNE1-235ENST00000537033 MPHOSPH10O00566 681 aaKnown RBP16.83■□□□□ 0.28
SYNE1-235ENST00000537033 SHMT1P34896 483 aa16.83■□□□□ 0.28
SYNE1-235ENST00000537033 CCNA1P78396 465 aa16.83■□□□□ 0.28
SYNE1-235ENST00000537033 TRMT44Q8IYL2 757 aaKnown RBP16.83■□□□□ 0.28
SYNE1-235ENST00000537033 RPTORQ8N122 1335 aa16.83■□□□□ 0.28
SYNE1-235ENST00000537033 HMX1Q9NP08 348 aaPredicted RBP16.83■□□□□ 0.28
SYNE1-235ENST00000537033 COLQQ9Y215 455 aaPredicted RBP16.83■□□□□ 0.28
SYNE1-235ENST00000537033 ATP5JP18859 108 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 VCAM1P19320 739 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 CYP2B6P20813 491 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 AMOTL1Q8IY63 956 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 LCORLQ8N3X6 602 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 SDR42E1Q8WUS8 393 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 DDRGK1Q96HY6 314 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 LRRCC1Q9C099 1032 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 CRISPLD2Q9H0B8 497 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 BOLA2Q9H3K6 86 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 DCP1AQ9NPI6 582 aaPredicted RBP16.82■□□□□ 0.28
SYNE1-235ENST00000537033 RBPJLQ9UBG7 517 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 RABGAP1Q9Y3P9 1069 aa16.82■□□□□ 0.28
SYNE1-235ENST00000537033 BAZ2AQ9UIF9 1905 aaKnown RBP16.81■□□□□ 0.28
SYNE1-235ENST00000537033 TCRBV5S4A2TA0A5A2 114 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 GLRX3O76003 335 aaKnown RBP16.81■□□□□ 0.28
SYNE1-235ENST00000537033 XRCC5P13010 732 aaKnown RBP16.81■□□□□ 0.28
SYNE1-235ENST00000537033 ZKSCAN1P17029 563 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-235ENST00000537033 RGS2P41220 211 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 GPR142Q7Z601 462 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 PLEKHH3Q7Z736 793 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 ANKLE1Q8NAG6 615 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 TRIB2Q92519 343 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 EDC3Q96F86 508 aaKnown RBP16.81■□□□□ 0.28
SYNE1-235ENST00000537033 ARMT1Q9H993 441 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 SWAP70Q9UH65 585 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 CEP290O15078 2479 aa16.81■□□□□ 0.28
SYNE1-235ENST00000537033 EVI5O60447 810 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 PEX10O60683 326 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 MBD4O95243 580 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 ADD2P35612 726 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 GABPAQ06546 454 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 WDR78Q5VTH9 848 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 CHRDL2Q6WN34 429 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 NECAB2Q7Z6G3 386 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 ACER1Q8TDN7 264 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 HAUS7Q99871 368 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 PORCNQ9H237 461 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 ATP8A2Q9NTI2 1148 aa16.8■□□□□ 0.28
SYNE1-235ENST00000537033 PRKAR2AP13861 404 aaKnown RBP16.79■□□□□ 0.28
SYNE1-235ENST00000537033 SEPT2Q15019 361 aa16.79■□□□□ 0.28
SYNE1-235ENST00000537033 ZSCAN25Q6NSZ9 544 aa16.79■□□□□ 0.28
SYNE1-235ENST00000537033 CATSPERGQ6ZRH7 1159 aa16.79■□□□□ 0.28
SYNE1-235ENST00000537033 TMEM179Q6ZVK1 233 aa16.79■□□□□ 0.28
SYNE1-235ENST00000537033 PAWRQ96IZ0 340 aaKnown RBP16.79■□□□□ 0.28
SYNE1-235ENST00000537033 APBA2Q99767 749 aa16.79■□□□□ 0.28
SYNE1-235ENST00000537033 RPAP3Q9H6T3 665 aaPredicted RBP16.79■□□□□ 0.28
SYNE1-235ENST00000537033 FXR1P51114 621 aaKnown RBP eCLIP16.78■□□□□ 0.28
SYNE1-235ENST00000537033 TRIM32Q13049 653 aa16.78■□□□□ 0.28
SYNE1-235ENST00000537033 Q3C1V9 767 aa16.78■□□□□ 0.28
SYNE1-235ENST00000537033 C20orf194Q5TEA3 1177 aa16.78■□□□□ 0.28
SYNE1-235ENST00000537033 SH2D4AQ9H788 454 aa16.78■□□□□ 0.28
SYNE1-235ENST00000537033 IVNS1ABPQ9Y6Y0 642 aa16.78■□□□□ 0.28
SYNE1-235ENST00000537033 CYP2D6P10635 497 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 GUCY1A2P33402 732 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 UBE3CQ15386 1083 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 MORN1Q5T089 497 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 MAP3K21Q5TCX8 1036 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 LBX2Q6XYB7 198 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 GPATCH3Q96I76 525 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 TANGO6Q9C0B7 1094 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 NBPF3Q9H094 633 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 ARHGEF10LQ9HCE6 1279 aa16.77■□□□□ 0.28
SYNE1-235ENST00000537033 ALPK3Q96L96 1907 aa16.76■□□□□ 0.27
SYNE1-235ENST00000537033 SPDYE16A6NNV3 312 aaPredicted RBP16.76■□□□□ 0.27
SYNE1-235ENST00000537033 CNMDO75829 334 aa16.76■□□□□ 0.27
SYNE1-235ENST00000537033 SLC44A5Q8NCS7 719 aa16.76■□□□□ 0.27
SYNE1-235ENST00000537033 USP6NLQ92738 828 aa16.76■□□□□ 0.27
SYNE1-235ENST00000537033 SLC15A5A6NIM6 579 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 PRKAB2O43741 272 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 SMARCA5O60264 1052 aaPredicted RBP16.75■□□□□ 0.27
SYNE1-235ENST00000537033 EVX2Q03828 476 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 ICA1Q05084 483 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 MAP2K5Q13163 448 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 POTEEQ6S8J3 1075 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 DIS3LQ8TF46 1054 aaKnown RBP16.75■□□□□ 0.27
SYNE1-235ENST00000537033 LPAR1Q92633 364 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 DYNLL2Q96FJ2 89 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 CCDC17Q96LX7 622 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 ECHDC1Q9NTX5 307 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 HOXC10Q9NYD6 342 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 SLC4A4Q9Y6R1 1079 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 A0A0G2JMZ2 1700 aa16.75■□□□□ 0.27
SYNE1-235ENST00000537033 CACNB2Q08289 660 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms