RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 GSX1Q9H4S2 264 aaPredicted RBP7.91□□□□□ -1.14
PRKDC-208ENST00000536710 LRIG2O94898 1065 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 TP53P04637 393 aaPredicted RBP7.9□□□□□ -1.14
PRKDC-208ENST00000536710 BBS9Q3SYG4 887 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 TDRD10Q5VZ19 366 aaKnown RBP7.9□□□□□ -1.14
PRKDC-208ENST00000536710 MRM1Q6IN84 353 aaKnown RBP7.9□□□□□ -1.14
PRKDC-208ENST00000536710 SH3TC2Q8TF17 1288 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 CYB5D2Q8WUJ1 264 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 FBLIM1Q8WUP2 373 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 WFDC12Q8WWY7 111 aa7.9□□□□□ -1.14
PRKDC-208ENST00000536710 ZNF214Q9UL59 606 aaPredicted RBP7.9□□□□□ -1.14
PRKDC-208ENST00000536710 ANKRD62A6NC57 917 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 CLEC3AO75596 197 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 UBOX5O94941 541 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 NFICP08651 508 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 NOS3P29474 1203 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 SSRP1Q08945 709 aaKnown RBP7.89□□□□□ -1.15
PRKDC-208ENST00000536710 CDPF1Q6NVV7 123 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 TMEM192Q8IY95 271 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 LILRB2Q8N423 598 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 MFSD2AQ8NA29 543 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 ACSS3Q9H6R3 686 aa7.89□□□□□ -1.15
PRKDC-208ENST00000536710 KDM2BQ8NHM5 1336 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 COL8A1P27658 744 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 CAP2P40123 477 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 PMS1P54277 932 aaKnown RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 TCEAL1Q15170 157 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 SGO2Q562F6 1265 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 SPATC1Q76KD6 591 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 ST13P5Q8NFI4 369 aaPredicted RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 KLHL6Q8WZ60 621 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 UTP4Q969X6 686 aaKnown RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 ZNF512BQ96KM6 892 aaPredicted RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 UBL7Q96S82 380 aaPredicted RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 MIPEPQ99797 713 aa7.88□□□□□ -1.15
PRKDC-208ENST00000536710 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 CWC22Q9HCG8 908 aaKnown RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 SUCOQ9UBS9 1254 aaKnown RBP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.88□□□□□ -1.15
PRKDC-208ENST00000536710 SUSD5O60279 629 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 LORP23490 312 aaPredicted RBP7.87□□□□□ -1.15
PRKDC-208ENST00000536710 HSD3B2P26439 372 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 ZNF662Q6ZS27 426 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 CCDC144CPQ8IYA2 1237 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 MKRN2Q9H000 416 aaKnown RBP7.87□□□□□ -1.15
PRKDC-208ENST00000536710 KCNF1Q9H3M0 494 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 SEMA6CQ9H3T2 930 aa7.87□□□□□ -1.15
PRKDC-208ENST00000536710 DIAPH1O60610 1272 aaKnown RBP7.86□□□□□ -1.15
PRKDC-208ENST00000536710 BMP3P12645 472 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 NCLP19338 710 aaKnown RBP7.86□□□□□ -1.15
PRKDC-208ENST00000536710 INSM1Q01101 510 aaPredicted RBP7.86□□□□□ -1.15
PRKDC-208ENST00000536710 MAP7Q14244 749 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 SV2CQ496J9 727 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 EGFLAMQ63HQ2 1017 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 LETMD1Q6P1Q0 360 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 Q6ZS46 218 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.86□□□□□ -1.15
PRKDC-208ENST00000536710 PPFIBP1Q86W92 1011 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 PPP1R14AQ96A00 147 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 FAM46AQ96IP4 442 aaKnown RBP7.86□□□□□ -1.15
PRKDC-208ENST00000536710 KANSL2Q9H9L4 492 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 FANCLQ9NW38 375 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 ZMYM5Q9UJ78 669 aa7.86□□□□□ -1.15
PRKDC-208ENST00000536710 ESYT3A0FGR9 886 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 C9IYK1 514 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 CDC45O75419 566 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 MAP4P27816 1152 aaKnown RBP7.85□□□□□ -1.15
PRKDC-208ENST00000536710 MBTPS1Q14703 1052 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 NFKBIBQ15653 356 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 HEATR6Q6AI08 1181 aaKnown RBP7.85□□□□□ -1.15
PRKDC-208ENST00000536710 CDH24Q86UP0 819 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 APPBP2Q92624 585 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 PUS7Q96PZ0 661 aaKnown RBP7.85□□□□□ -1.15
PRKDC-208ENST00000536710 CEP131Q9UPN4 1083 aa7.85□□□□□ -1.15
PRKDC-208ENST00000536710 SBNO2Q9Y2G9 1366 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 FAM95CA0A1B0GW59 222 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 AGRPO00253 132 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 ENPP3O14638 875 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 DYNC1LI2O43237 492 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-208ENST00000536710 NAT2P11245 290 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 CDK5R2Q13319 367 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 ADGRE1Q14246 886 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 UVSSAQ2YD98 709 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 SLC10A6Q3KNW5 377 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 C2orf27AQ580R0 203 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 ADAT2Q7Z6V5 191 aaKnown RBP7.84□□□□□ -1.15
PRKDC-208ENST00000536710 HOMER1Q86YM7 354 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 THAP3Q8WTV1 239 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-208ENST00000536710 SMARCC1Q92922 1105 aaPredicted RBP7.84□□□□□ -1.15
PRKDC-208ENST00000536710 HAUS7Q99871 368 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 LRP2BPQ9P2M1 347 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 LEMD3Q9Y2U8 911 aa7.84□□□□□ -1.15
PRKDC-208ENST00000536710 ANKRD34BA5PLL1 514 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 IQCA1LA6NCM1 817 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 SLITRK5O94991 958 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 EPHX1P07099 455 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 AXDND1Q5T1B0 1012 aaPredicted RBP7.83□□□□□ -1.16
PRKDC-208ENST00000536710 DCAF15Q66K64 600 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 TXNRD3Q86VQ6 643 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 RIN3Q8TB24 985 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms