RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 CDHR2Q9BYE9 1310 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 POTEB3A0JP26 581 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 CCDC151A5D8V7 595 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 DIAPH1O60610 1272 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 PRPF6O94906 941 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 CDC25BP30305 580 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 ABCD1P33897 745 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 SEC24CP53992 1094 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 APBA1Q02410 837 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 MTA1Q13330 715 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 EZH2Q15910 746 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 CDCA2Q69YH5 1023 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 NCAPH2Q6IBW4 605 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 LARP1Q6PKG0 1096 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 POTEBQ6S5H4 581 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 LAPTM4BQ86VI4 370 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 PROCA1Q8NCQ7 364 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 NUP133Q8WUM0 1156 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 NUDT16Q96DE0 195 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 JAKMIP1Q96N16 626 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 SLC12A5Q9H2X9 1139 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 DCTPP1Q9H773 170 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 MRPL44Q9H9J2 332 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 BSDC1Q9NW68 430 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 TPX2Q9ULW0 747 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 PPP2R2CQ9Y2T4 447 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 PHLPP2Q6ZVD8 1323 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 A0A1B0GVL5 298 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 SGSM2O43147 1006 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 EVI5O60447 810 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 EIF3JO75822 258 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 CHMLP26374 656 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 TPP2P29144 1249 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 TMPOP42166 694 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 PDE1AP54750 535 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 KRT85P78386 507 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 EN1Q05925 392 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 MYO1EQ12965 1108 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 TRAF1Q13077 416 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 IFT88Q13099 833 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 LAMB3Q13751 1172 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 RBBP5Q15291 538 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 ATL3Q6DD88 541 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 ADGRD1Q6QNK2 874 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 Q6ZUG5 572 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 B4GALNT2Q8NHY0 566 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 RABGGTAQ92696 567 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 EZH1Q92800 747 aaPredicted RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 SAAL1Q96ER3 474 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 MEIS3Q99687 375 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 PAIP2Q9BPZ3 127 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 TACO1Q9BSH4 297 aaKnown RBP4.23□□□□□ -1.73
MCF2-210ENST00000536274 PHACTR1Q9C0D0 580 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 SIL1Q9H173 461 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 STK32BQ9NY57 414 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 SNX14Q9Y5W7 946 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 TTC41PQ6P2S7 1318 aa4.23□□□□□ -1.73
MCF2-210ENST00000536274 TMCO4Q5TGY1 634 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 TLDC1Q6P9B6 456 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ANKRD23Q86SG2 305 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 CCDC13Q8IYE1 715 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ZNF454Q8N9F8 522 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 FLAD1Q8NFF5 587 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ATL2Q8NHH9 583 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 FAM71BQ8TC56 605 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 STAG1Q8WVM7 1258 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 KIFC2Q96AC6 838 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 CRACR2AQ9BSW2 395 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ACBD3Q9H3P7 528 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 IL1RAPL2Q9NP60 686 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 GRIN2DO15399 1336 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 TTC21BQ7Z4L5 1316 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 NRXN2Q9P2S2 1712 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 A0A1B0GUA9 196 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 NDUFAB1O14561 156 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 GRIN3BO60391 1043 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 NEMFO60524 1076 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 JAK2O60674 1132 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 APBA3O96018 575 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ERCC3P19447 782 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 MRPL12P52815 198 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 GUCY1B3Q02153 619 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 MTX1Q13505 466 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 R3HDM1Q15032 1099 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 CCDC40Q4G0X9 1142 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 WLSQ5T9L3 541 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 NUTM1Q86Y26 1132 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 MRPL50Q8N5N7 158 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 NSMCE1Q8WV22 266 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 RRP36Q96EU6 259 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 XAGE2Q96GT9 111 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 CDC5LQ99459 802 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 TFR2Q9UP52 801 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 RIPOR2Q9Y4F9 1068 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 TAF6LQ9Y6J9 622 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ZC3H4Q9UPT8 1303 aaKnown RBP4.22□□□□□ -1.73
MCF2-210ENST00000536274 THSD7BQ9C0I4 1608 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 C4BP0C0L5 1744 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 ANKRD18BA2A2Z9 1011 aa4.22□□□□□ -1.73
MCF2-210ENST00000536274 SPDYE3A6NKU9 549 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms