RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 VSTM4Q8IW00 320 aa15.04■□□□□ -0
LDLR-203ENST00000535915 AATFQ9NY61 560 aaKnown RBP eCLIP15.04■□□□□ -0
LDLR-203ENST00000535915 SEMA3EO15041 775 aa15.04■□□□□ -0
LDLR-203ENST00000535915 RPS8P62241 208 aaKnown RBP15.04■□□□□ -0
LDLR-203ENST00000535915 TROAPQ12815 778 aa15.04■□□□□ -0
LDLR-203ENST00000535915 EARS2Q5JPH6 523 aaKnown RBP15.04■□□□□ -0
LDLR-203ENST00000535915 MLKLQ8NB16 471 aa15.04■□□□□ -0
LDLR-203ENST00000535915 TFCP2L1Q9NZI6 479 aa15.04■□□□□ -0
LDLR-203ENST00000535915 ACTN4O43707 911 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 FGRP09769 529 aa15.03■□□□□ -0
LDLR-203ENST00000535915 ZSCAN20P17040 1043 aaPredicted RBP15.03■□□□□ -0
LDLR-203ENST00000535915 CDK11BP21127 795 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 SARSP49591 514 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 FAM98CQ17RN3 349 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 SLC10A5Q5PT55 438 aa15.03■□□□□ -0
LDLR-203ENST00000535915 NLRP3Q96P20 1036 aa15.03■□□□□ -0
LDLR-203ENST00000535915 NOL10Q9BSC4 688 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 BRMS1Q9HCU9 246 aa15.03■□□□□ -0
LDLR-203ENST00000535915 HIBADHP31937 336 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 EVX2Q03828 476 aa15.03■□□□□ -0
LDLR-203ENST00000535915 MORC3Q14149 939 aa15.03■□□□□ -0
LDLR-203ENST00000535915 DHX58Q96C10 678 aa15.03■□□□□ -0
LDLR-203ENST00000535915 CRNKL1Q9BZJ0 848 aaKnown RBP15.03■□□□□ -0
LDLR-203ENST00000535915 NYXQ9GZU5 481 aa15.03■□□□□ -0
LDLR-203ENST00000535915 ZNF215Q9UL58 517 aaPredicted RBP15.03■□□□□ -0
LDLR-203ENST00000535915 NFE2L3Q9Y4A8 694 aa15.03■□□□□ -0
LDLR-203ENST00000535915 DDAH1O94760 285 aa15.02■□□□□ -0
LDLR-203ENST00000535915 FMR1Q06787 632 aaKnown RBP eCLIP15.02■□□□□ -06e-7■□□□□ 9.2
LDLR-203ENST00000535915 TRMT44Q8IYL2 757 aaKnown RBP15.02■□□□□ -0
LDLR-203ENST00000535915 TRIML1Q8N9V2 468 aa15.02■□□□□ -0
LDLR-203ENST00000535915 SETDB2Q96T68 719 aa15.02■□□□□ -0
LDLR-203ENST00000535915 NMT2O60551 498 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 CBX1P83916 185 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 GOLGA8FQ08AF8 430 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 GOLGA8DPQ0D2H9 430 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 SYT10Q6XYQ8 523 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 NBPF5PQ86XG9 351 aaPredicted RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 HOMER1Q86YM7 354 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 CCDC24Q8N4L8 307 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 CTCFLQ8NI51 663 aaPredicted RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 BBXQ8WY36 941 aaPredicted RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 CCDC34Q96HJ3 373 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 EPSTI1Q96J88 318 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 DCP1AQ9NPI6 582 aaPredicted RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 PRDX5P30044 214 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 FAM47AQ5JRC9 791 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 TMTC3Q6ZXV5 915 aa15.02□□□□□ -0.01
LDLR-203ENST00000535915 ENOX1Q8TC92 643 aaKnown RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 SRP68Q9UHB9 627 aaKnown RBP15.02□□□□□ -0.01
LDLR-203ENST00000535915 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.02□□□□□ -0.018e-10■□□□□ 8.4
LDLR-203ENST00000535915 CNTNAP4Q9C0A0 1308 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 MAST2Q6P0Q8 1798 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 CCP110O43303 1012 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 ANKRD2Q9GZV1 360 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 INTS13Q9NVM9 706 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 CGNQ9P2M7 1197 aaKnown RBP15.01□□□□□ -0.01
LDLR-203ENST00000535915 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.01□□□□□ -0.01
LDLR-203ENST00000535915 V9GYY5 206 aaPredicted RBP15.01□□□□□ -0.01
LDLR-203ENST00000535915 KIAA1551Q9HCM1 1747 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 ORC4O43929 436 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 AFMP43652 599 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 ZNF174Q15697 407 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 ATP8A2Q9NTI2 1148 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 NARFQ9UHQ1 456 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 JAG2Q9Y219 1238 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 CNTNAP5Q8WYK1 1306 aa15.01□□□□□ -0.01
LDLR-203ENST00000535915 A0A087X0B3 334 aa15□□□□□ -0.01
LDLR-203ENST00000535915 SPDYE4A6NLX3 237 aa15□□□□□ -0.01
LDLR-203ENST00000535915 SLU7O95391 586 aaKnown RBP15□□□□□ -0.01
LDLR-203ENST00000535915 BMP15O95972 392 aa15□□□□□ -0.01
LDLR-203ENST00000535915 SRBD1Q8N5C6 995 aaKnown RBP15□□□□□ -0.01
LDLR-203ENST00000535915 SYMPKQ92797 1274 aaKnown RBP15□□□□□ -0.01
LDLR-203ENST00000535915 FERMT2Q96AC1 680 aa15□□□□□ -0.01
LDLR-203ENST00000535915 TMX1Q9H3N1 280 aa15□□□□□ -0.01
LDLR-203ENST00000535915 WNT7AO00755 349 aa15□□□□□ -0.01
LDLR-203ENST00000535915 ZPR1O75312 459 aa15□□□□□ -0.01
LDLR-203ENST00000535915 CYP2D6P10635 497 aa15□□□□□ -0.01
LDLR-203ENST00000535915 ZNF18P17022 549 aa15□□□□□ -0.01
LDLR-203ENST00000535915 PDS5AQ29RF7 1337 aaKnown RBP15□□□□□ -0.01
LDLR-203ENST00000535915 NOM1Q5C9Z4 860 aaKnown RBP15□□□□□ -0.01
LDLR-203ENST00000535915 SPATA20Q8TB22 786 aa15□□□□□ -0.01
LDLR-203ENST00000535915 ERO1AQ96HE7 468 aa15□□□□□ -0.01
LDLR-203ENST00000535915 MORC2Q9Y6X9 1032 aaPredicted RBP15□□□□□ -0.01
LDLR-203ENST00000535915 COL24A1Q17RW2 1714 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 TSPY2A6NKD2 308 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 PLCD1P51178 756 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 SLC4A8Q2Y0W8 1093 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 TTC38Q5R3I4 469 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 SAMSN1Q9NSI8 373 aaKnown RBP14.99□□□□□ -0.01
LDLR-203ENST00000535915 ARPP21Q9UBL0 812 aaPredicted RBP14.99□□□□□ -0.01
LDLR-203ENST00000535915 TUBB4AP04350 444 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 SLFN14P0C7P3 912 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 PTF1AQ7RTS3 328 aa14.99□□□□□ -0.01
LDLR-203ENST00000535915 VWA3AA6NCI4 1184 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 RGL2O15211 777 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 GNPATO15228 680 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 NLRP5P59047 1200 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 PTGDRQ13258 359 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 NPY5RQ15761 445 aa14.98□□□□□ -0.01
LDLR-203ENST00000535915 SPECC1LQ69YQ0 1117 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms