RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 TRAPPC8Q9Y2L5 1435 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 HS1BP3Q53T59 392 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TRIM31Q9BZY9 425 aa20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 ARPP21Q9UBL0 812 aaPredicted RBP20.16■□□□□ 0.82
SFSWAP-203ENST00000535236 TNNI1P19237 187 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 SRGAP1Q7Z6B7 1085 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 TPH2Q8IWU9 490 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 GNPTABQ3T906 1256 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 TAB2Q9NYJ8 693 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 TACC3Q9Y6A5 838 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 USP19O94966 1318 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 FLOT1O75955 427 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 KLHL30Q0D2K2 578 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 IFT20Q8IY31 132 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 DEPTORQ8TB45 409 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 TEKT1Q969V4 418 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 TTLL3Q9Y4R7 772 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 FAM47AQ5JRC9 791 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 MIER3Q7Z3K6 550 aa20.15■□□□□ 0.82
SFSWAP-203ENST00000535236 CEP104O60308 925 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 GAS7O60861 476 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 GTF2IP78347 998 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 PPP2R5CQ13362 524 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 CASC4Q6P4E1 433 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 SYCE1Q8N0S2 351 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 PAGR1Q9BTK6 254 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 KCNJ14Q9UNX9 436 aa20.14■□□□□ 0.82
SFSWAP-203ENST00000535236 IL13P35225 146 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 NLRP12P59046 1061 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 PRPF31Q8WWY3 499 aaKnown RBP20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 NELFBQ8WX92 580 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 NT5C3AQ9H0P0 336 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 MAGEA1P43355 309 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 LGSNQ5TDP6 509 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 OTUD7AQ8TE49 926 aaPredicted RBP20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 MLXIPQ9HAP2 919 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 ARHGEF10O15013 1369 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 GIGYF1O75420 1035 aaPredicted RBP20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 FAM47CQ5HY64 1035 aa20.14■□□□□ 0.81
SFSWAP-203ENST00000535236 ZNF202O95125 648 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 CUL4BQ13620 913 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 SWAP70Q9UH65 585 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 POSTNQ15063 836 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 SFMBT2Q5VUG0 894 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 UHRF1BP1Q6BDS2 1440 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 EDC4Q6P2E9 1401 aaKnown RBP20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 SGSM2O43147 1006 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 ERCC3P19447 782 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 CEP85LQ5SZL2 805 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 NEDD9Q14511 834 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 ARHGEF16Q5VV41 709 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 EPSTI1Q96J88 318 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 MYO1AQ9UBC5 1043 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 PPARAQ07869 468 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 MFSD14BQ5SR56 506 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 TMTC1Q8IUR5 882 aa20.13■□□□□ 0.81
SFSWAP-203ENST00000535236 RPS8P62241 208 aaKnown RBP20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 SDCCAG8Q86SQ7 713 aaPredicted RBP20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 METTL13Q8N6R0 699 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 BCS1LQ9Y276 419 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 SMCO2A6NFE2 343 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 YARSP54577 528 aaKnown RBP20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 ATP8A2Q9NTI2 1148 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 NDUFB9Q9Y6M9 179 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 KDM3AQ9Y4C1 1321 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 KIF22Q14807 665 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 ANO3Q9BYT9 981 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 CD2APQ9Y5K6 639 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 hCG_1642624A0A1W2PR95 340 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 TESPA1A2RU30 521 aaPredicted RBP20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 ARHGAP44Q17R89 818 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 IWS1Q96ST2 819 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 TRPC6Q9Y210 931 aa20.12■□□□□ 0.81
SFSWAP-203ENST00000535236 GKAP1Q5VSY0 366 aaPredicted RBP20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 HHATQ5VTY9 493 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 CROCCP2Q86T23 111 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 VPS54Q9P1Q0 977 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 FAM102BQ5T8I3 360 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 CCDC105Q8IYK2 499 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 CCDC89Q8N998 374 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 KLHL7Q8IXQ5 586 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 AFAP1L1Q8TED9 768 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 MED10Q9BTT4 135 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 RNF169Q8NCN4 708 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 MAIP1Q8WWC4 291 aa20.11■□□□□ 0.81
SFSWAP-203ENST00000535236 NR1I2O75469 434 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 SLC12A2P55011 1212 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 GPR162Q16538 588 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 CCDC84Q86UT8 332 aaPredicted RBP20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 GPIHBP1Q8IV16 184 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 ERO1AQ96HE7 468 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 BLZF1Q9H2G9 400 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 NFE2L3Q9Y4A8 694 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 CHL1O00533 1208 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 ZBTB8OSQ8IWT0 167 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 RDH13Q8NBN7 331 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 UGGT2Q9NYU1 1516 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 GNA14O95837 355 aa20.1■□□□□ 0.81
SFSWAP-203ENST00000535236 GTF2A1P52655 376 aaPredicted RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms