RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 GFRA2O00451 464 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 PRRG2O14669 202 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 LMNB1P20700 586 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 CREG2Q8IUH2 290 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 SLC26A8Q96RN1 970 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 TJP2Q9UDY2 1190 aa8.61□□□□□ -1.03
SYNE1-232ENST00000535081 PGRP06401 933 aa8.6□□□□□ -1.03
SYNE1-232ENST00000535081 ETV3P41162 512 aa8.6□□□□□ -1.03
SYNE1-232ENST00000535081 TMEM87BQ96K49 555 aa8.6□□□□□ -1.03
SYNE1-232ENST00000535081 SMG5Q9UPR3 1016 aaKnown RBP8.6□□□□□ -1.03
SYNE1-232ENST00000535081 PCDHB5Q9Y5E4 795 aa8.6□□□□□ -1.03
SYNE1-232ENST00000535081 WASH4PA8MWX3 477 aa8.59□□□□□ -1.03
SYNE1-232ENST00000535081 B8ZZF3 427 aa8.59□□□□□ -1.03
SYNE1-232ENST00000535081 INHBBP09529 407 aa8.59□□□□□ -1.03
SYNE1-232ENST00000535081 CCDC85BQ15834 202 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-232ENST00000535081 Q96M66 194 aa8.59□□□□□ -1.03
SYNE1-232ENST00000535081 ADAMTS10Q9H324 1103 aa8.59□□□□□ -1.03
SYNE1-232ENST00000535081 P4HBP07237 508 aaKnown RBP8.58□□□□□ -1.04
SYNE1-232ENST00000535081 TPP2P29144 1249 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-232ENST00000535081 LINC00310P59036 64 aa8.58□□□□□ -1.04
SYNE1-232ENST00000535081 SLC6A19Q695T7 634 aa8.58□□□□□ -1.04
SYNE1-232ENST00000535081 FRMD6Q96NE9 622 aa8.58□□□□□ -1.04
SYNE1-232ENST00000535081 RNF32Q9H0A6 362 aa8.58□□□□□ -1.04
SYNE1-232ENST00000535081 TRIT1Q9H3H1 467 aaKnown RBP8.58□□□□□ -1.04
SYNE1-232ENST00000535081 NUAK1O60285 661 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 SRFP11831 508 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 TRHRP34981 398 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-232ENST00000535081 GAB4Q2WGN9 574 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 LCE5AQ5TCM9 118 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 DNAJB8Q8NHS0 232 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 KCNN1Q92952 543 aa8.57□□□□□ -1.04
SYNE1-232ENST00000535081 DUSP15Q9H1R2 295 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-232ENST00000535081 LDHBP07195 334 aaKnown RBP8.56□□□□□ -1.04
SYNE1-232ENST00000535081 EIF4BP23588 611 aaKnown RBP8.56□□□□□ -1.04
SYNE1-232ENST00000535081 AGMOQ6ZNB7 445 aa8.56□□□□□ -1.04
SYNE1-232ENST00000535081 DUSP13Q9UII6 198 aa8.56□□□□□ -1.04
SYNE1-232ENST00000535081 PDE4BQ07343 736 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 MCATQ8IVS2 390 aaKnown RBP8.55□□□□□ -1.04
SYNE1-232ENST00000535081 PDZD8Q8NEN9 1154 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 KRTAP4-5Q9BYR2 181 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 MIR1-1HGQ9H1L0 117 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 SP110Q9HB58 689 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 GPATCH2Q9NW75 528 aa8.55□□□□□ -1.04
SYNE1-232ENST00000535081 GNA15P30679 374 aa8.54□□□□□ -1.04
SYNE1-232ENST00000535081 LIG3P49916 1009 aa8.54□□□□□ -1.04
SYNE1-232ENST00000535081 EGR3Q06889 387 aa8.54□□□□□ -1.04
SYNE1-232ENST00000535081 ADAM30Q9UKF2 790 aa8.54□□□□□ -1.04
SYNE1-232ENST00000535081 CEP131Q9UPN4 1083 aa8.54□□□□□ -1.04
SYNE1-232ENST00000535081 ZGLP1P0C6A0 271 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 BUD31P41223 144 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-232ENST00000535081 MAP3K11Q16584 847 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 IRF2BP1Q8IU81 584 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 LILRA2Q8N149 483 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 ACSF2Q96CM8 615 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-232ENST00000535081 GPR62Q9BZJ7 368 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 SLC6A17Q9H1V8 727 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 C19orf44Q9H6X5 657 aa8.53□□□□□ -1.04
SYNE1-232ENST00000535081 CTSWP56202 376 aa8.52□□□□□ -1.05
SYNE1-232ENST00000535081 TSPYL5Q86VY4 417 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-232ENST00000535081 OXR1Q8N573 874 aa8.52□□□□□ -1.05
SYNE1-232ENST00000535081 DTWD2Q8NBA8 298 aa8.52□□□□□ -1.05
SYNE1-232ENST00000535081 MCOLN1Q9GZU1 580 aa8.52□□□□□ -1.05
SYNE1-232ENST00000535081 IRF2BPLQ9H1B7 796 aa8.52□□□□□ -1.05
SYNE1-232ENST00000535081 FITM1A5D6W6 292 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 LTKP29376 864 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 RPL6Q02878 288 aaKnown RBP8.51□□□□□ -1.05
SYNE1-232ENST00000535081 TSNAXIP1Q2TAA8 658 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 TIGD5Q53EQ6 642 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 PPP1R13LQ8WUF5 828 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 CYB5D2Q8WUJ1 264 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 KCNH3Q9ULD8 1083 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 IVNS1ABPQ9Y6Y0 642 aa8.51□□□□□ -1.05
SYNE1-232ENST00000535081 TFE3P19532 575 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-232ENST00000535081 CWC22Q9HCG8 908 aaKnown RBP8.5□□□□□ -1.05
SYNE1-232ENST00000535081 PCDHA11Q9Y5I1 949 aa8.5□□□□□ -1.05
SYNE1-232ENST00000535081 SEMA7AO75326 666 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 PRPF40AO75400 957 aaKnown RBP8.49□□□□□ -1.05
SYNE1-232ENST00000535081 HOXA5P20719 270 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 DLG4P78352 724 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 NR0B2Q15466 257 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 ZNF605Q86T29 641 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 DHX38Q92620 1227 aaKnown RBP8.49□□□□□ -1.05
SYNE1-232ENST00000535081 INTS4Q96HW7 963 aaKnown RBP8.49□□□□□ -1.05
SYNE1-232ENST00000535081 KRTAP9-3Q9BYQ3 159 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 AK5Q9Y6K8 562 aa8.49□□□□□ -1.05
SYNE1-232ENST00000535081 MYOCOSA0A1B0GUC4 107 aa8.48□□□□□ -1.05
SYNE1-232ENST00000535081 FAM13CQ8NE31 585 aa8.48□□□□□ -1.05
SYNE1-232ENST00000535081 SYTL4Q96C24 671 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-232ENST00000535081 YBX2Q9Y2T7 364 aaKnown RBP8.48□□□□□ -1.05
SYNE1-232ENST00000535081 PEX10O60683 326 aa8.47□□□□□ -1.05
SYNE1-232ENST00000535081 BAHD1Q8TBE0 780 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-232ENST00000535081 RNF141Q8WVD5 230 aa8.47□□□□□ -1.05
SYNE1-232ENST00000535081 JARID2Q92833 1246 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-232ENST00000535081 CORINQ9Y5Q5 1042 aa8.47□□□□□ -1.05
SYNE1-232ENST00000535081 UPK3BL1B0FP48 263 aa8.46□□□□□ -1.06
SYNE1-232ENST00000535081 UPK3BL2E5RIL1 263 aa8.46□□□□□ -1.06
SYNE1-232ENST00000535081 SUPT5HO00267 1087 aaKnown RBP8.46□□□□□ -1.06
SYNE1-232ENST00000535081 PLCG1P19174 1290 aa8.46□□□□□ -1.06
SYNE1-232ENST00000535081 YARSP54577 528 aaKnown RBP8.46□□□□□ -1.06
SYNE1-232ENST00000535081 C20orf173Q96LM9 149 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms