RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 PAK6Q9NQU5 681 aaPredicted RBP21.54■■□□□ 1.04
PCF11-206ENST00000533018 PLXNB2O15031 1838 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 TCRBV5S4A2TA0A5A2 114 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L15C9J2P7 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L13C9JLJ4 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L11C9JVI0 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L18D6R9N7 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L22D6RA61 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L17D6RBQ6 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L19D6RCP7 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L20D6RJB6 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 MAPK4P31152 587 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 USP17L24Q0WX57 530 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 ACER1Q8TDN7 264 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.53■■□□□ 1.043e-11■□□□□ 10.1
PCF11-206ENST00000533018 ARMT1Q9H993 441 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 HMX1Q9NP08 348 aaPredicted RBP21.53■■□□□ 1.04
PCF11-206ENST00000533018 PCDH10Q9P2E7 1040 aa21.53■■□□□ 1.04
PCF11-206ENST00000533018 ATP5JP18859 108 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 TRIM32Q13049 653 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 SEPT2Q15019 361 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 SOCS4Q8WXH5 440 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 C12orf42Q96LP6 360 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 LRRCC1Q9C099 1032 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 DCP1AQ9NPI6 582 aaPredicted RBP21.52■■□□□ 1.04
PCF11-206ENST00000533018 NR2E3Q9Y5X4 410 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 MYH8P13535 1937 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 TRIOBPQ9H2D6 2365 aa21.52■■□□□ 1.04
PCF11-206ENST00000533018 RPTORQ8N122 1335 aa21.52■■□□□ 1.03
PCF11-206ENST00000533018 DDX60LQ5H9U9 1706 aaKnown RBP21.52■■□□□ 1.03
PCF11-206ENST00000533018 CAPN2P17655 700 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 VCAM1P19320 739 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 EVX2Q03828 476 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 SLFNL1Q499Z3 407 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 WDR78Q5VTH9 848 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 CHRDL2Q6WN34 429 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 TRIB2Q92519 343 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 KIAA1683Q9H0B3 1180 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 PORCNQ9H237 461 aa21.51■■□□□ 1.03
PCF11-206ENST00000533018 SMARCA5O60264 1052 aaPredicted RBP21.5■■□□□ 1.03
PCF11-206ENST00000533018 EVI5O60447 810 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 MBD4O95243 580 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 CYP2D6P10635 497 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 ADD2P35612 726 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 GABPAQ06546 454 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 CATSPERGQ6ZRH7 1159 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 GPR142Q7Z601 462 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 PLEKHH3Q7Z736 793 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 PAWRQ96IZ0 340 aaKnown RBP21.5■■□□□ 1.03
PCF11-206ENST00000533018 HAUS7Q99871 368 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 CRISPLD2Q9H0B8 497 aa21.5■■□□□ 1.03
PCF11-206ENST00000533018 BAZ2AQ9UIF9 1905 aaKnown RBP21.5■■□□□ 1.03
PCF11-206ENST00000533018 MYH7P12883 1935 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 PRKAB2O43741 272 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 GUCY1A2P33402 732 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 RGS2P41220 211 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 CCNA1P78396 465 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 AMOTL1Q8IY63 956 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 RPAP3Q9H6T3 665 aaPredicted RBP21.49■■□□□ 1.03
PCF11-206ENST00000533018 RABGAP1Q9Y3P9 1069 aa21.49■■□□□ 1.03
PCF11-206ENST00000533018 RANBP2P49792 3224 aaKnown RBP21.49■■□□□ 1.03
PCF11-206ENST00000533018 XRCC5P13010 732 aaKnown RBP21.48■■□□□ 1.03
PCF11-206ENST00000533018 PRKAR2AP13861 404 aaKnown RBP21.48■■□□□ 1.03
PCF11-206ENST00000533018 ZKSCAN1P17029 563 aaPredicted RBP21.48■■□□□ 1.03
PCF11-206ENST00000533018 NECAB2Q7Z6G3 386 aa21.48■■□□□ 1.03
PCF11-206ENST00000533018 SLC44A5Q8NCS7 719 aa21.48■■□□□ 1.03
PCF11-206ENST00000533018 DDRGK1Q96HY6 314 aa21.48■■□□□ 1.03
PCF11-206ENST00000533018 GLRX3O76003 335 aaKnown RBP21.47■■□□□ 1.03
PCF11-206ENST00000533018 ZSCAN25Q6NSZ9 544 aa21.47■■□□□ 1.03
PCF11-206ENST00000533018 POTEEQ6S8J3 1075 aa21.47■■□□□ 1.03
PCF11-206ENST00000533018 TRMT44Q8IYL2 757 aaKnown RBP21.47■■□□□ 1.03
PCF11-206ENST00000533018 DIS3LQ8TF46 1054 aaKnown RBP21.47■■□□□ 1.03
PCF11-206ENST00000533018 DYNLL2Q96FJ2 89 aa21.47■■□□□ 1.03
PCF11-206ENST00000533018 ATP8A2Q9NTI2 1148 aa21.47■■□□□ 1.03
PCF11-206ENST00000533018 SWAP70Q9UH65 585 aa21.47■■□□□ 1.03
PCF11-206ENST00000533018 CNMDO75829 334 aa21.46■■□□□ 1.03
PCF11-206ENST00000533018 CHGBP05060 677 aa21.46■■□□□ 1.03
PCF11-206ENST00000533018 FXR1P51114 621 aaKnown RBP eCLIP21.46■■□□□ 1.03
PCF11-206ENST00000533018 TMEM179Q6ZVK1 233 aa21.46■■□□□ 1.03
PCF11-206ENST00000533018 TANGO6Q9C0B7 1094 aa21.46■■□□□ 1.03
PCF11-206ENST00000533018 A0A1W2PRG0 241 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 UBE3CQ15386 1083 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 CCL14Q16627 93 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 MORN1Q5T089 497 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 ANKLE1Q8NAG6 615 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 APBA2Q99767 749 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 SLC4A4Q9Y6R1 1079 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 IVNS1ABPQ9Y6Y0 642 aa21.45■■□□□ 1.02
PCF11-206ENST00000533018 CACNB2Q08289 660 aaPredicted RBP21.44■■□□□ 1.02
PCF11-206ENST00000533018 MAP2K5Q13163 448 aa21.44■■□□□ 1.02
PCF11-206ENST00000533018 USP6NLQ92738 828 aa21.44■■□□□ 1.02
PCF11-206ENST00000533018 ARHGEF10LQ9HCE6 1279 aa21.44■■□□□ 1.02
PCF11-206ENST00000533018 ECHDC1Q9NTX5 307 aa21.44■■□□□ 1.02
PCF11-206ENST00000533018 BTBD7Q9P203 1132 aa21.44■■□□□ 1.02
PCF11-206ENST00000533018 RBM27Q9P2N5 1060 aaKnown RBP21.44■■□□□ 1.02
PCF11-206ENST00000533018 SZT2Q5T011 3432 aa21.43■■□□□ 1.02
PCF11-206ENST00000533018 CYP2D7A0A087X1C5 515 aa21.43■■□□□ 1.02
PCF11-206ENST00000533018 SPDYE16A6NNV3 312 aaPredicted RBP21.43■■□□□ 1.02
PCF11-206ENST00000533018 USP17L12C9JPN9 530 aa21.43■■□□□ 1.02
PCF11-206ENST00000533018 USP17L21D6R901 530 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 499.2 ms