RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MKNK2Q9HBH9 465 aa23.68■■□□□ 1.38
CPSF1-209ENST00000532725 EMILIN3Q9NT22 766 aa23.68■■□□□ 1.38
CPSF1-209ENST00000532725 PTPRFP10586 1907 aa23.67■■□□□ 1.38
CPSF1-209ENST00000532725 CHMLP26374 656 aa23.67■■□□□ 1.38
CPSF1-209ENST00000532725 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.67■■□□□ 1.38
CPSF1-209ENST00000532725 PPP4R2Q9NY27 417 aa23.67■■□□□ 1.38
CPSF1-209ENST00000532725 A0A1W2PRG0 241 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 CYP2C8P10632 490 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 USP17L2Q6R6M4 530 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 C17orf99Q6UX52 265 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 KIAA1683Q9H0B3 1180 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 IL25Q9H293 177 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 TMOD4Q9NZQ9 345 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 ANAPC4Q9UJX5 808 aa23.66■■□□□ 1.38
CPSF1-209ENST00000532725 ADGRA2Q96PE1 1338 aa23.65■■□□□ 1.38
CPSF1-209ENST00000532725 ZNF444Q8N0Y2 327 aaPredicted RBP23.65■■□□□ 1.38
CPSF1-209ENST00000532725 ZNF287Q9HBT7 754 aa23.65■■□□□ 1.38
CPSF1-209ENST00000532725 ZMYM6O95789 1325 aa23.64■■□□□ 1.38
CPSF1-209ENST00000532725 PRDM1O75626 825 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 SLC3A2P08195 630 aaKnown RBP23.64■■□□□ 1.37
CPSF1-209ENST00000532725 HOXA7P31268 230 aaPredicted RBP23.64■■□□□ 1.37
CPSF1-209ENST00000532725 USP14P54578 494 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 SP3Q02447 781 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 CTDSPL2Q05D32 466 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 PDE4BQ07343 736 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 C12orf42Q96LP6 360 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 PARK7Q99497 189 aaKnown RBP23.64■■□□□ 1.37
CPSF1-209ENST00000532725 KANSL2Q9H9L4 492 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 INCENPQ9NQS7 918 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 TACC3Q9Y6A5 838 aa23.64■■□□□ 1.37
CPSF1-209ENST00000532725 FGRP09769 529 aa23.63■■□□□ 1.37
CPSF1-209ENST00000532725 ICA1Q05084 483 aa23.62■■□□□ 1.37
CPSF1-209ENST00000532725 PABPC4Q13310 644 aaKnown RBP eCLIP23.62■■□□□ 1.375e-6■□□□□ 10
CPSF1-209ENST00000532725 CLEC10AQ8IUN9 316 aa23.62■■□□□ 1.37
CPSF1-209ENST00000532725 FEZ1Q99689 392 aa23.62■■□□□ 1.37
CPSF1-209ENST00000532725 DSCC1Q9BVC3 393 aa23.62■■□□□ 1.37
CPSF1-209ENST00000532725 CPA4Q9UI42 421 aa23.62■■□□□ 1.37
CPSF1-209ENST00000532725 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.62■■□□□ 1.37
CPSF1-209ENST00000532725 CAP1Q01518 475 aa23.61■■□□□ 1.37
CPSF1-209ENST00000532725 ZYXQ15942 572 aaKnown RBP23.61■■□□□ 1.37
CPSF1-209ENST00000532725 BMP2KLQ5H9B9 411 aa23.61■■□□□ 1.37
CPSF1-209ENST00000532725 RUFY2Q8WXA3 655 aa23.61■■□□□ 1.37
CPSF1-209ENST00000532725 ASCC2Q9H1I8 757 aaPredicted RBP23.61■■□□□ 1.37
CPSF1-209ENST00000532725 TMX2Q9Y320 296 aa23.61■■□□□ 1.37
CPSF1-209ENST00000532725 IGKV6D-41A0A0C4DH26 115 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 BCRP11274 1271 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 EEF2P13639 858 aaKnown RBP23.6■■□□□ 1.37
CPSF1-209ENST00000532725 OSBPP22059 807 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 CTU1Q7Z7A3 348 aaKnown RBP23.6■■□□□ 1.37
CPSF1-209ENST00000532725 TNS4Q8IZW8 715 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 ERO1AQ96HE7 468 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 ARHGEF10LQ9HCE6 1279 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 PNMA3Q9UL41 463 aa23.6■■□□□ 1.37
CPSF1-209ENST00000532725 RAD50Q92878 1312 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 MYH8P13535 1937 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 TFAP4Q01664 338 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 KIAA1755Q5JYT7 1200 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 NEDD1Q8NHV4 660 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 CD99L2Q8TCZ2 262 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 P2RX7Q99572 595 aaKnown RBP23.59■■□□□ 1.37
CPSF1-209ENST00000532725 LOC285556D6RIA3 1793 aa23.59■■□□□ 1.37
CPSF1-209ENST00000532725 SGSM2O43147 1006 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 ORC4O43929 436 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 VCAM1P19320 739 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 HAND2P61296 217 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 FAM47AQ5JRC9 791 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 SMCR8Q8TEV9 937 aaPredicted RBP23.58■■□□□ 1.37
CPSF1-209ENST00000532725 NBPF3Q9H094 633 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 NYAP2Q9P242 653 aa23.58■■□□□ 1.37
CPSF1-209ENST00000532725 USP17L15C9J2P7 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L13C9JLJ4 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L11C9JVI0 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L18D6R9N7 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L22D6RA61 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L17D6RBQ6 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L19D6RCP7 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L20D6RJB6 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 LACTBP83111 547 aaPredicted RBP23.57■■□□□ 1.36
CPSF1-209ENST00000532725 USP17L24Q0WX57 530 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 CATSPERGQ6ZRH7 1159 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 MCOLN1Q9GZU1 580 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 MTMR4Q9NYA4 1195 aa23.57■■□□□ 1.36
CPSF1-209ENST00000532725 ZNF213O14771 459 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 TSPY3P0CV98 308 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 TSPY8P0CW00 308 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 GCLCP48506 637 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-209ENST00000532725 IRX3P78415 501 aaPredicted RBP23.56■■□□□ 1.36
CPSF1-209ENST00000532725 ATP2B2Q01814 1243 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 MKL1Q969V6 931 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 SH2D4AQ9H788 454 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 VCPKMTQ9H867 229 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 CTNNA3Q9UI47 895 aa23.56■■□□□ 1.36
CPSF1-209ENST00000532725 PTH1RQ03431 593 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 AKNAD1Q5T1N1 836 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 POTEEQ6S8J3 1075 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 OTOP1Q7RTM1 612 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 LPAR1Q92633 364 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 CEP95Q96GE4 821 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 CLIP2Q9UDT6 1046 aa23.55■■□□□ 1.36
CPSF1-209ENST00000532725 GREB1LQ9C091 1923 aaPredicted RBP23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms