RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 DDX60LQ5H9U9 1706 aaKnown RBP20.68■□□□□ 0.9
PHRF1-204ENST00000532550 GUCY1A2P33402 732 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 CTR9Q6PD62 1173 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 SLC44A5Q8NCS7 719 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 ACER1Q8TDN7 264 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 OSBP2Q969R2 916 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 C12orf42Q96LP6 360 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 KIAA1683Q9H0B3 1180 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 GABRQQ9UN88 632 aa20.68■□□□□ 0.9
PHRF1-204ENST00000532550 DOCK3Q8IZD9 2030 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 CYP2D7A0A087X1C5 515 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L15C9J2P7 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L13C9JLJ4 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L11C9JVI0 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L18D6R9N7 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L22D6RA61 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L17D6RBQ6 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L19D6RCP7 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L20D6RJB6 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 CDK8P49336 464 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 FLT3LGP49771 235 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 HERVK_113P62684 666 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 USP17L24Q0WX57 530 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 TMEM179Q6ZVK1 233 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 CCDC17Q96LX7 622 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 FSD1Q9BTV5 496 aa20.67■□□□□ 0.9
PHRF1-204ENST00000532550 PDE4DIPQ5VU43 2346 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 GNAT2P19087 354 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 GIMAP6Q6P9H5 292 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 SLAIN1Q8ND83 568 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 GPRC5AQ8NFJ5 357 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 GTF3C2Q8WUA4 911 aaPredicted RBP20.66■□□□□ 0.9
PHRF1-204ENST00000532550 ARPP21Q9UBL0 812 aaPredicted RBP20.66■□□□□ 0.9
PHRF1-204ENST00000532550 MORF4L1Q9UBU8 362 aa20.66■□□□□ 0.9
PHRF1-204ENST00000532550 GSG1L2A8MUP6 293 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 GPAA1O43292 621 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 ADCY3O60266 1144 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 APPP05067 770 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 EN2P19622 333 aaPredicted RBP20.65■□□□□ 0.9
PHRF1-204ENST00000532550 UBXN2AP68543 259 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 CATSPERGQ6ZRH7 1159 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 C16orf86Q6ZW13 317 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 MYH8P13535 1937 aa20.65■□□□□ 0.9
PHRF1-204ENST00000532550 AKR1B1P15121 316 aa20.64■□□□□ 0.89
PHRF1-204ENST00000532550 SBK1Q52WX2 424 aa20.64■□□□□ 0.89
PHRF1-204ENST00000532550 CCAR1Q8IX12 1150 aaKnown RBP20.64■□□□□ 0.89
PHRF1-204ENST00000532550 EXOC6Q8TAG9 804 aa20.64■□□□□ 0.89
PHRF1-204ENST00000532550 RBPJLQ9UBG7 517 aa20.64■□□□□ 0.89
PHRF1-204ENST00000532550 SUPT16HQ9Y5B9 1047 aaKnown RBP20.64■□□□□ 0.89
PHRF1-204ENST00000532550 SALL3Q9BXA9 1300 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 MINDY4BA8MYZ0 360 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 PATL2C9JE40 543 aaKnown RBP20.63■□□□□ 0.89
PHRF1-204ENST00000532550 SMIM22K7EJ46 135 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 M0R2C6 588 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 VCAM1P19320 739 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 IRF5Q13568 498 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 PXYLP1Q8TE99 480 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 PAGR1Q9BTK6 254 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 ARHGEF10LQ9HCE6 1279 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 STAP2Q9UGK3 403 aa20.63■□□□□ 0.89
PHRF1-204ENST00000532550 A0A1W2PRG0 241 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 TDO2P48775 406 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 PDE1AP54750 535 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 MTFR1Q15390 333 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 Q3C1V9 767 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 B4GALNT3Q6L9W6 998 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 NACAP1Q9BZK3 213 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 RPAP3Q9H6T3 665 aaPredicted RBP20.62■□□□□ 0.89
PHRF1-204ENST00000532550 SH2D4AQ9H788 454 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 MKNK2Q9HBH9 465 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 TXNRD2Q9NNW7 524 aa20.62■□□□□ 0.89
PHRF1-204ENST00000532550 PEX10O60683 326 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 ELNP15502 786 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 ERVK-9P63128 1117 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 ERVK-24P63145 666 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 ICA1Q05084 483 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 ZMYM1Q5SVZ6 1142 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 EVI5LQ96CN4 794 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 SEC62Q99442 399 aaKnown RBP20.61■□□□□ 0.89
PHRF1-204ENST00000532550 LNPKQ9C0E8 428 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 RNF208Q9H0X6 261 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 RABGAP1Q9Y3P9 1069 aa20.61■□□□□ 0.89
PHRF1-204ENST00000532550 RBBP6Q7Z6E9 1792 aaKnown RBP20.6■□□□□ 0.89
PHRF1-204ENST00000532550 CCL5P13501 91 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 MAPK4P31152 587 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 ATP2B2Q01814 1243 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 SMC5Q8IY18 1101 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 IFNL3Q8IZI9 196 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 STK11IPQ8N1F8 1099 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 KANSL2Q9H9L4 492 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 HOXC10Q9NYD6 342 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 GJD2Q9UKL4 321 aa20.6■□□□□ 0.89
PHRF1-204ENST00000532550 TNRC18O15417 2968 aaPredicted RBP20.6■□□□□ 0.89
PHRF1-204ENST00000532550 IGHDP01880 384 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 CCNA1P78396 465 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 COG2Q14746 738 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 SIAH1Q8IUQ4 282 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 NKX2-3Q8TAU0 364 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 ZNF287Q9HBT7 754 aa20.59■□□□□ 0.89
PHRF1-204ENST00000532550 CWC22Q9HCG8 908 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms