RNA–Protein interactions for RNA: ENST00000531303.5

SMPD1-205, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 1,451 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-205ENST00000531303 LIMCH1Q9UPQ0 1083 aa22.35■■□□□ 1.17
SMPD1-205ENST00000531303 PLIN4Q96Q06 1357 aa22.35■■□□□ 1.17
SMPD1-205ENST00000531303 GREB1LQ9C091 1923 aaPredicted RBP22.35■■□□□ 1.17
SMPD1-205ENST00000531303 KLF18A0A0U1RQI7 1052 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CCDC69A6NI79 296 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 KIF3CO14782 793 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 GUCY1A2P33402 732 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CCDC178Q5BJE1 867 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CHMP4CQ96CF2 233 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 KLRG1Q96E93 195 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MTA3Q9BTC8 594 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 TBC1D2Q9BYX2 928 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MTMR4Q9NYA4 1195 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 ZNF112Q9UJU3 913 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 BRPF3Q9ULD4 1205 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 IGKV6D-41A0A0C4DH26 115 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CTNND1O60716 968 aaKnown RBP22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MCM2P49736 904 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 STK3Q13188 491 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 RCSD1Q6JBY9 416 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CCDC84Q86UT8 332 aaPredicted RBP22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MYL10Q9BUA6 226 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 AGXT2Q9BYV1 514 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 CLIP2Q9UDT6 1046 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MTMR7Q9Y216 660 aa22.34■■□□□ 1.17
SMPD1-205ENST00000531303 MYH4Q9Y623 1939 aa22.33■■□□□ 1.17
SMPD1-205ENST00000531303 LIFRP42702 1097 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 ICA1Q05084 483 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 DGKHQ86XP1 1220 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 TMTC2Q8N394 836 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 FBXL16Q8N461 479 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 IL27Q8NEV9 243 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 KANSL2Q9H9L4 492 aa22.33■■□□□ 1.16
SMPD1-205ENST00000531303 LARGE1O95461 756 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 TTLL1O95922 423 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 IREB2P48200 963 aaKnown RBP22.32■■□□□ 1.16
SMPD1-205ENST00000531303 BECN1Q14457 450 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 LRRC47Q8N1G4 583 aaKnown RBP22.32■■□□□ 1.16
SMPD1-205ENST00000531303 TMEM47Q9BQJ4 181 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 KAT14Q9H8E8 782 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 SLC12A7Q9Y666 1083 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 DOCK1Q14185 1865 aa22.32■■□□□ 1.16
SMPD1-205ENST00000531303 K7ELQ4 463 aaPredicted RBP22.31■■□□□ 1.16
SMPD1-205ENST00000531303 CELF2O95319 508 aaKnown RBP22.31■■□□□ 1.16
SMPD1-205ENST00000531303 ASNSP08243 561 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 EEF2P13639 858 aaKnown RBP22.31■■□□□ 1.16
SMPD1-205ENST00000531303 RXRAP19793 462 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 SLC4A3P48751 1232 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 MAP3K9P80192 1104 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 ME3Q16798 604 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 SYNE3Q6ZMZ3 975 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 SGMS1Q86VZ5 419 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 SCYL3Q8IZE3 742 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.31■■□□□ 1.16
SMPD1-205ENST00000531303 NUP133Q8WUM0 1156 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 TMX3Q96JJ7 454 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 PICK1Q9NRD5 415 aa22.31■■□□□ 1.16
SMPD1-205ENST00000531303 GOLGA8BA8MQT2 603 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 UBE2Q2LH0YL09 131 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 RAD21O60216 631 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 ITGBL1O95965 494 aaPredicted RBP22.3■■□□□ 1.16
SMPD1-205ENST00000531303 TOP1P11387 765 aaKnown RBP22.3■■□□□ 1.16
SMPD1-205ENST00000531303 ARMC9Q7Z3E5 817 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 CATIPQ7Z7H3 387 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 MICU3Q86XE3 530 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 CCDC144CPQ8IYA2 1237 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 ZNF654Q8IZM8 581 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 NECAB1Q8N987 351 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 ZNF784Q8NCA9 323 aaPredicted RBP22.3■■□□□ 1.16
SMPD1-205ENST00000531303 ANKS1AQ92625 1134 aa22.3■■□□□ 1.16
SMPD1-205ENST00000531303 OTOFQ9HC10 1997 aa22.29■■□□□ 1.16
SMPD1-205ENST00000531303 PDIA3P30101 505 aaKnown RBP22.29■■□□□ 1.16
SMPD1-205ENST00000531303 CCT2P78371 535 aaKnown RBP22.29■■□□□ 1.16
SMPD1-205ENST00000531303 APOA5Q6Q788 366 aa22.29■■□□□ 1.16
SMPD1-205ENST00000531303 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.29■■□□□ 1.16
SMPD1-205ENST00000531303 SIAH1Q8IUQ4 282 aa22.29■■□□□ 1.16
SMPD1-205ENST00000531303 PNMA1Q8ND90 353 aa22.29■■□□□ 1.16
SMPD1-205ENST00000531303 ZSCAN31Q96LW9 406 aaPredicted RBP22.29■■□□□ 1.16
SMPD1-205ENST00000531303 ZBTB43O43298 467 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 VGLL4Q14135 290 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 PPP4R3BQ5MIZ7 849 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 ACER1Q8TDN7 264 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 SLKQ9H2G2 1235 aaPredicted RBP22.28■■□□□ 1.16
SMPD1-205ENST00000531303 NYAP2Q9P242 653 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 CSADQ9Y600 493 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 EVCP57679 992 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 SPRYD3Q8NCJ5 442 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 ZNF274Q96GC6 653 aaPredicted RBP22.28■■□□□ 1.16
SMPD1-205ENST00000531303 CLMNQ96JQ2 1002 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 ARHGEF10LQ9HCE6 1279 aa22.28■■□□□ 1.16
SMPD1-205ENST00000531303 TRPM7Q96QT4 1865 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 USP17L5A8MUK1 530 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 ECE1P42892 770 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 NOVP48745 357 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 CCDC83Q8IWF9 413 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 SMC1BQ8NDV3 1235 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 ELP3Q9H9T3 547 aa22.27■■□□□ 1.16
SMPD1-205ENST00000531303 NCOA5Q9HCD5 579 aaKnown RBP22.27■■□□□ 1.16
SMPD1-205ENST00000531303 GBA2Q9HCG7 927 aaPredicted RBP22.27■■□□□ 1.16
SMPD1-205ENST00000531303 FOXD4L1Q9NU39 408 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms