RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 OSBPL1AQ9BXW6 950 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 MYO15BQ96JP2 1530 aa7.56□□□□□ -1.2
CD44-230ENST00000528922 NME1P15531 152 aaKnown RBP7.55□□□□□ -1.2
CD44-230ENST00000528922 GIPRP48546 466 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 EIF6P56537 245 aaKnown RBP7.55□□□□□ -1.2
CD44-230ENST00000528922 CYP27C1Q4G0S4 372 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 RUFY4Q6ZNE9 571 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 NLRC3Q7RTR2 1065 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 CEP131Q9UPN4 1083 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 U3KQE9 123 aa7.55□□□□□ -1.2
CD44-230ENST00000528922 RGS13O14921 159 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 TGFB1P01137 390 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 POLR2BP30876 1174 aaKnown RBP7.54□□□□□ -1.2
CD44-230ENST00000528922 LSRQ86X29 649 aaPredicted RBP7.54□□□□□ -1.2
CD44-230ENST00000528922 PHACTR4Q8IZ21 702 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 CPLX3Q8WVH0 158 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 CCDC74BQ96LY2 380 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 CRBNQ96SW2 442 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 SLC9A7Q96T83 725 aa7.54□□□□□ -1.2
CD44-230ENST00000528922 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.54□□□□□ -1.2
CD44-230ENST00000528922 METTL22Q9BUU2 404 aaPredicted RBP7.54□□□□□ -1.2
CD44-230ENST00000528922 EIF4G1Q04637 1599 aaKnown RBP7.54□□□□□ -1.2
CD44-230ENST00000528922 COL17A1Q9UMD9 1497 aaPredicted RBP7.54□□□□□ -1.2
CD44-230ENST00000528922 UBOX5O94941 541 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 ACRP10323 421 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 RAG1P15918 1043 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 FAM169BQ8N8A8 192 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 PIM2Q9P1W9 311 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 STRIP2Q9ULQ0 834 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 LEMD3Q9Y2U8 911 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 MRVI1Q9Y6F6 885 aa7.53□□□□□ -1.2
CD44-230ENST00000528922 TNFRSF10CO14798 259 aa7.52□□□□□ -1.2
CD44-230ENST00000528922 HOXA10P31260 410 aaPredicted RBP7.52□□□□□ -1.2
CD44-230ENST00000528922 INTS3Q68E01 1043 aaKnown RBP7.52□□□□□ -1.2
CD44-230ENST00000528922 FAM181AQ8N9Y4 354 aa7.52□□□□□ -1.2
CD44-230ENST00000528922 ANAPC16Q96DE5 110 aa7.52□□□□□ -1.2
CD44-230ENST00000528922 LRRC4CQ9HCJ2 640 aa7.52□□□□□ -1.2
CD44-230ENST00000528922 TPX2Q9ULW0 747 aaKnown RBP7.52□□□□□ -1.2
CD44-230ENST00000528922 SSBP05455 408 aaKnown RBP eCLIP7.52□□□□□ -1.21
CD44-230ENST00000528922 GBP1P32455 592 aa7.52□□□□□ -1.21
CD44-230ENST00000528922 ETFBP38117 255 aa7.52□□□□□ -1.21
CD44-230ENST00000528922 ZYXQ15942 572 aaKnown RBP7.52□□□□□ -1.21
CD44-230ENST00000528922 CPSF6Q16630 551 aaKnown RBP eCLIP7.52□□□□□ -1.21
CD44-230ENST00000528922 TM9SF2Q99805 663 aa7.52□□□□□ -1.21
CD44-230ENST00000528922 PRDM5Q9NQX1 630 aaPredicted RBP7.52□□□□□ -1.21
CD44-230ENST00000528922 LOC100996750A0A140TA64 210 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 FAM86C2PA6NEL3 165 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 PRR33A8MZF0 331 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 IGF2BP3O00425 579 aaKnown RBP eCLIP7.51□□□□□ -1.21
CD44-230ENST00000528922 CYP26A1O43174 497 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 MED26O95402 600 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 FOSL1P15407 271 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 OXCT1P55809 520 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 TAB3Q8N5C8 712 aaPredicted RBP7.51□□□□□ -1.21
CD44-230ENST00000528922 KRTAP4-6Q9BYQ5 205 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 GTF2IRD1Q9UHL9 959 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 RNF112Q9ULX5 631 aa7.51□□□□□ -1.21
CD44-230ENST00000528922 GUCY2CP25092 1073 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 ETV3P41162 512 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 SFRP5Q5T4F7 317 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 TMEM192Q8IY95 271 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 OR6P1Q8NGX9 317 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 VWCEQ96DN2 955 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 KREMEN1Q96MU8 473 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 TANGO6Q9C0B7 1094 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 ZNF408Q9H9D4 720 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 ZC3H7BQ9UGR2 993 aaKnown RBP7.5□□□□□ -1.21
CD44-230ENST00000528922 MAPK8IP1Q9UQF2 711 aa7.5□□□□□ -1.21
CD44-230ENST00000528922 A0A1W2PQH9 124 aa7.49□□□□□ -1.21
CD44-230ENST00000528922 CCNFP41002 786 aa7.49□□□□□ -1.21
CD44-230ENST00000528922 ZNF746Q6NUN9 644 aaPredicted RBP7.49□□□□□ -1.21
CD44-230ENST00000528922 UNC5AQ6ZN44 842 aa7.49□□□□□ -1.21
CD44-230ENST00000528922 TTC6Q86TZ1 520 aa7.49□□□□□ -1.21
CD44-230ENST00000528922 PLAGL2Q9UPG8 496 aa7.49□□□□□ -1.21
CD44-230ENST00000528922 LTBP3Q9NS15 1303 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 SMAD7O15105 426 aaKnown RBP7.48□□□□□ -1.21
CD44-230ENST00000528922 LRRN2O75325 713 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 CBX7O95931 251 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 CYP7A1P22680 504 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 CASP7P55210 303 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 NKPD1Q17RQ9 610 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 C19orf47Q8N9M1 422 aaKnown RBP7.48□□□□□ -1.21
CD44-230ENST00000528922 Q96M66 194 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.48□□□□□ -1.21
CD44-230ENST00000528922 TNKS2Q9H2K2 1166 aa7.48□□□□□ -1.21
CD44-230ENST00000528922 ZNF865P0CJ78 1059 aaPredicted RBP7.47□□□□□ -1.21
CD44-230ENST00000528922 ITIH2P19823 946 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 PPP2R5EQ16537 467 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 MSMPQ1L6U9 139 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 NBPF12Q5TAG4 269 aaPredicted RBP7.47□□□□□ -1.21
CD44-230ENST00000528922 C22orf34Q6ZV56 151 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 PLD6Q8N2A8 252 aaKnown RBP7.47□□□□□ -1.21
CD44-230ENST00000528922 RNF141Q8WVD5 230 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 ZNF512BQ96KM6 892 aaPredicted RBP7.47□□□□□ -1.21
CD44-230ENST00000528922 SLC6A18Q96N87 628 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 MKNK2Q9HBH9 465 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 PRKAG3Q9UGI9 489 aa7.47□□□□□ -1.21
CD44-230ENST00000528922 COBLO75128 1261 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 CLEC3AO75596 197 aa7.46□□□□□ -1.22
CD44-230ENST00000528922 CEACAM5P06731 702 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms