RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 SURF6O75683 361 aaKnown RBP12.87□□□□□ -0.35
CPSF1-203ENST00000527916 COL9A1P20849 921 aa12.87□□□□□ -0.35
CPSF1-203ENST00000527916 WDR78Q5VTH9 848 aa12.87□□□□□ -0.35
CPSF1-203ENST00000527916 CRACR2BQ8N4Y2 399 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-203ENST00000527916 NSUN4Q96CB9 384 aaKnown RBP12.87□□□□□ -0.35
CPSF1-203ENST00000527916 ZNF512BQ96KM6 892 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-203ENST00000527916 PRDM5Q9NQX1 630 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-203ENST00000527916 RAI14Q9P0K7 980 aa12.87□□□□□ -0.35
CPSF1-203ENST00000527916 RABGAP1Q9Y3P9 1069 aa12.87□□□□□ -0.35
CPSF1-203ENST00000527916 IVNS1ABPQ9Y6Y0 642 aa12.87□□□□□ -0.35
CPSF1-203ENST00000527916 FRMPD3Q5JV73 1810 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 TMEM265A0A087WTH1 108 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 SLC15A5A6NIM6 579 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 KBTBD13C9JR72 458 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 BAG3O95817 575 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 TNNI3KQ59H18 835 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 TJAP1Q5JTD0 557 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 C9orf50Q5SZB4 431 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L2Q6R6M4 530 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 FOXP4Q8IVH2 680 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-203ENST00000527916 ZNF384Q8TF68 577 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 TTYH1Q9H313 450 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-203ENST00000527916 FPGT-TNNI3KV9GXZ4 949 aa12.86□□□□□ -0.35
CPSF1-203ENST00000527916 TNFRSF10AO00220 468 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 HOXC6P09630 235 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 PLCG2P16885 1265 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 PTPREP23469 700 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 CCDC158Q5M9N0 1113 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 SLC39A5Q6ZMH5 540 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 BADQ92934 168 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 LRP2BPQ9P2M1 347 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 ZBTB21Q9ULJ3 1066 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 MYO9BQ13459 2157 aa12.85□□□□□ -0.35
CPSF1-203ENST00000527916 LTBP2Q14767 1821 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L15C9J2P7 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L13C9JLJ4 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L11C9JVI0 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L18D6R9N7 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L22D6RA61 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L17D6RBQ6 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L19D6RCP7 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L20D6RJB6 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 MCAMP43121 646 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 USP17L24Q0WX57 530 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 OS9Q13438 667 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-203ENST00000527916 GJC2Q5T442 439 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-203ENST00000527916 CEP85Q6P2H3 762 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 SH3RF3Q8TEJ3 882 aaPredicted RBP12.84□□□□□ -0.35
CPSF1-203ENST00000527916 FEZ1Q99689 392 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 C1orf115Q9H7X2 142 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 EMILIN3Q9NT22 766 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 FLRT1Q9NZU1 646 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 NDUFB9Q9Y6M9 179 aa12.84□□□□□ -0.35
CPSF1-203ENST00000527916 BDP1A6H8Y1 2624 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 GDF11O95390 407 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 CYP2C19P33261 490 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 GRB14Q14449 540 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 PI16Q6UXB8 463 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 TBC1D9Q6ZT07 1266 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 METTL16Q86W50 562 aaKnown RBP12.83□□□□□ -0.36
CPSF1-203ENST00000527916 PANK1Q8TE04 598 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 RNPC3Q96LT9 517 aaKnown RBP12.83□□□□□ -0.36
CPSF1-203ENST00000527916 DBNDD2Q9BQY9 259 aa12.83□□□□□ -0.36
CPSF1-203ENST00000527916 CHMP4BQ9H444 224 aaKnown RBP12.83□□□□□ -0.36
CPSF1-203ENST00000527916 RLFQ13129 1914 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 MYCNP04198 464 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-203ENST00000527916 HLA-DOAP06340 250 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 USP14P54578 494 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 JAG1P78504 1218 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 SNX17Q15036 470 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 TRIM60Q495X7 471 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 HSP90AB4PQ58FF6 505 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 TTC39AQ5SRH9 613 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 POTEEQ6S8J3 1075 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 DPP9Q86TI2 863 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 ERC1Q8IUD2 1116 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 MAPKAPK5Q8IW41 473 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 RPAP2Q8IXW5 612 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-203ENST00000527916 TGFBRAP1Q8WUH2 860 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 PDLIM7Q9NR12 457 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 AATFQ9NY61 560 aaKnown RBP eCLIP12.82□□□□□ -0.36
CPSF1-203ENST00000527916 RCAN3Q9UKA8 241 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
CPSF1-203ENST00000527916 MYO5AQ9Y4I1 1855 aaKnown RBP12.81□□□□□ -0.36
CPSF1-203ENST00000527916 CNMDO75829 334 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 CYBAP13498 195 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 C1orf53Q5VUE5 145 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 OLFML2BQ68BL8 750 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 NAA16Q6N069 864 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-203ENST00000527916 LBX2Q6XYB7 198 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 TRPV1Q8NER1 839 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 EAF2Q96CJ1 260 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-203ENST00000527916 C12orf42Q96LP6 360 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 DNAJC18Q9H819 358 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 ZBTB40Q9NUA8 1239 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 SLC5A4Q9NY91 659 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 PALD1Q9ULE6 856 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 TACC3Q9Y6A5 838 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 FLT1P17948 1338 aa12.81□□□□□ -0.36
CPSF1-203ENST00000527916 SEPT4O43236 478 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms