RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 USP17L21D6R901 530 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CNMDO75829 334 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CCL5P13501 91 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 AKR1B1P15121 316 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 KIAA1755Q5JYT7 1200 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CTR9Q6PD62 1173 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CATSPERGQ6ZRH7 1159 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CLEC10AQ8IUN9 316 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 KBTBD3Q8NAB2 608 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 SLAIN1Q8ND83 568 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 PI4K2BQ8TCG2 481 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 OSBP2Q969R2 916 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 UNC93B1Q9H1C4 597 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 CABP5Q9NP86 173 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 SLC4A4Q9Y6R1 1079 aa12.58□□□□□ -0.4
PRPF40B-204ENST00000527253 BRCA2P51587 3418 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L15C9J2P7 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L13C9JLJ4 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L11C9JVI0 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L18D6R9N7 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L22D6RA61 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L17D6RBQ6 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L19D6RCP7 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L20D6RJB6 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 MPHOSPH10O00566 681 aaKnown RBP12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 RNF113AO15541 343 aaKnown RBP12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 VCAM1P19320 739 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 CDK8P49336 464 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 USP17L24Q0WX57 530 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 ZSCAN25Q6NSZ9 544 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 GPRC5AQ8NFJ5 357 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 PXYLP1Q8TE99 480 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 COA7Q96BR5 231 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 FEZ1Q99689 392 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 BIN2Q9UBW5 565 aaPredicted RBP12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 PLXNB2O15031 1838 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 SALL3Q9BXA9 1300 aa12.57□□□□□ -0.4
PRPF40B-204ENST00000527253 GSG1L2A8MUP6 293 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 M0R2C6 588 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 INHAP05111 366 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 GJB1P08034 283 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 TRIM32Q13049 653 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 PRPF38BQ5VTL8 546 aaKnown RBP12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 RNF208Q9H0X6 261 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 PORCNQ9H237 461 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 SWAP70Q9UH65 585 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 TAOK2Q9UL54 1235 aa12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 MKI67P46013 3256 aaKnown RBP12.56□□□□□ -0.4
PRPF40B-204ENST00000527253 GJA8P48165 433 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 USP14P54578 494 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 ERVK-9P63128 1117 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 ERVK-24P63145 666 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 UBXN2AP68543 259 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 TMEM179Q6ZVK1 233 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 C16orf86Q6ZW13 317 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 UBE2Q1Q7Z7E8 422 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 APPBP2Q92624 585 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 GPATCH3Q96I76 525 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 SEC62Q99442 399 aaKnown RBP12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 PAGR1Q9BTK6 254 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 RPAP3Q9H6T3 665 aaPredicted RBP12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 BTBD7Q9P203 1132 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 CEP290O15078 2479 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 TTC41PQ6P2S7 1318 aa12.55□□□□□ -0.4
PRPF40B-204ENST00000527253 MX1P20591 662 aa12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 HDAC1Q13547 482 aaPredicted RBP12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 SBK1Q52WX2 424 aa12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 ANKRD45Q5TZF3 282 aa12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 U2AF1L4Q8WU68 220 aaKnown RBP12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 USP6NLQ92738 828 aa12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 EPB41L4AQ9HCS5 686 aaPredicted RBP12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 RABGAP1Q9Y3P9 1069 aa12.54□□□□□ -0.4
PRPF40B-204ENST00000527253 SPDYE16A6NNV3 312 aaPredicted RBP12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 GPAA1O43292 621 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 GLRX3O76003 335 aaKnown RBP12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 SGPL1O95470 568 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 ZFYP08048 801 aaPredicted RBP12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 CYP2B6P20813 491 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 MORN1Q5T089 497 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 LBX2Q6XYB7 198 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 GPR142Q7Z601 462 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 STK11IPQ8N1F8 1099 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 TRIB2Q92519 343 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 CCDC17Q96LX7 622 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 PAK6Q9NQU5 681 aaPredicted RBP12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 TMX2Q9Y320 296 aa12.53□□□□□ -0.4
PRPF40B-204ENST00000527253 RLFQ13129 1914 aa12.52□□□□□ -0.4
PRPF40B-204ENST00000527253 ERC2O15083 957 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 EEF2P13639 858 aaKnown RBP12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 RASA1P20936 1047 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 MAPK4P31152 587 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 ICA1Q05084 483 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 GIMAP6Q6P9H5 292 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 PLEKHH3Q7Z736 793 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 SPICE1Q8N0Z3 855 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 NKX2-3Q8TAU0 364 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 GTF3C2Q8WUA4 911 aaPredicted RBP12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 DEFB118Q96PH6 123 aa12.52□□□□□ -0.41
PRPF40B-204ENST00000527253 ARPP21Q9UBL0 812 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms