RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ANKRD2Q9GZV1 360 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 L2HGDHQ9H9P8 463 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 ATP8A2Q9NTI2 1148 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.25■■□□□ 1.471e-7■■■■□ 24.2
VPS28-205ENST00000526204 PLEKHA8P1O95397 391 aa24.25■■□□□ 1.47
VPS28-205ENST00000526204 CDK11BP21127 795 aaKnown RBP24.25■■□□□ 1.47
VPS28-205ENST00000526204 PRDM1O75626 825 aa24.24■■□□□ 1.47
VPS28-205ENST00000526204 MECOMQ03112 1051 aa24.24■■□□□ 1.47
VPS28-205ENST00000526204 CTCFLQ8NI51 663 aaPredicted RBP24.24■■□□□ 1.47
VPS28-205ENST00000526204 NLRP3Q96P20 1036 aa24.24■■□□□ 1.47
VPS28-205ENST00000526204 SLFN14P0C7P3 912 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 HIBADHP31937 336 aaKnown RBP24.23■■□□□ 1.47
VPS28-205ENST00000526204 PLCD1P51178 756 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 TMEM232C9JQI7 657 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 FMR1Q06787 632 aaKnown RBP eCLIP24.23■■□□□ 1.47
VPS28-205ENST00000526204 TBX2Q13207 712 aaPredicted RBP24.23■■□□□ 1.47
VPS28-205ENST00000526204 TBC1D9BQ66K14 1250 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 SYT10Q6XYQ8 523 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 BICDL1Q6ZP65 573 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 USP49Q70CQ1 688 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 INTS13Q9NVM9 706 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 A0A1B0GUL6 1792 aa24.23■■□□□ 1.47
VPS28-205ENST00000526204 SCN7AQ01118 1682 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 ARHGAP6O43182 974 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 ETF1P62495 437 aaKnown RBP24.22■■□□□ 1.47
VPS28-205ENST00000526204 NAA30Q147X3 362 aaPredicted RBP24.22■■□□□ 1.47
VPS28-205ENST00000526204 HOMER1Q86YM7 354 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 TNFRSF25Q93038 417 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 DCP1AQ9NPI6 582 aaPredicted RBP24.22■■□□□ 1.47
VPS28-205ENST00000526204 ARPP21Q9UBL0 812 aaPredicted RBP24.22■■□□□ 1.47
VPS28-205ENST00000526204 ZBTB22O15209 634 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 ZSCAN12O43309 604 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 NT5C2P49902 561 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 SBK1Q52WX2 424 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 SPECC1LQ69YQ0 1117 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 GRAMD1CQ8IYS0 662 aa24.22■■□□□ 1.47
VPS28-205ENST00000526204 FAM205CA6NFA0 338 aa24.21■■□□□ 1.47
VPS28-205ENST00000526204 PIP4K2BP78356 416 aa24.21■■□□□ 1.47
VPS28-205ENST00000526204 DHX58Q96C10 678 aa24.21■■□□□ 1.47
VPS28-205ENST00000526204 SETDB2Q96T68 719 aa24.21■■□□□ 1.47
VPS28-205ENST00000526204 PHLPP2Q6ZVD8 1323 aa24.21■■□□□ 1.47
VPS28-205ENST00000526204 CBX1P83916 185 aa24.2■■□□□ 1.47
VPS28-205ENST00000526204 EARS2Q5JPH6 523 aaKnown RBP24.2■■□□□ 1.47
VPS28-205ENST00000526204 SH3RF1Q7Z6J0 888 aa24.2■■□□□ 1.47
VPS28-205ENST00000526204 ZMYND15Q9H091 742 aa24.2■■□□□ 1.47
VPS28-205ENST00000526204 NARFQ9UHQ1 456 aa24.2■■□□□ 1.47
VPS28-205ENST00000526204 CNTNAP5Q8WYK1 1306 aa24.2■■□□□ 1.47
VPS28-205ENST00000526204 hCG_1642624A0A1W2PR95 340 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 IGSF3O75054 1194 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 TRAPPC10P48553 1259 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 ZNF827Q17R98 1081 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 CCDC93Q567U6 631 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 TTC38Q5R3I4 469 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 RC3H1Q5TC82 1133 aaKnown RBP24.2■■□□□ 1.46
VPS28-205ENST00000526204 EPSTI1Q96J88 318 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 GSDMAQ96QA5 445 aa24.2■■□□□ 1.46
VPS28-205ENST00000526204 NUTM2BA6NNL0 878 aaPredicted RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 NUTM2EB1AL46 878 aaPredicted RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 STX10O60499 249 aa24.19■■□□□ 1.46
VPS28-205ENST00000526204 NPY5RQ15761 445 aa24.19■■□□□ 1.46
VPS28-205ENST00000526204 SRBD1Q8N5C6 995 aaKnown RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 ZNF397Q8NF99 534 aaPredicted RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 SYMPKQ92797 1274 aaKnown RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 OGFRQ9NZT2 677 aa24.19■■□□□ 1.46
VPS28-205ENST00000526204 NBPF5PQ86XG9 351 aaPredicted RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 TMEM139Q8IV31 216 aa24.19■■□□□ 1.46
VPS28-205ENST00000526204 PAGE5Q96GU1 130 aa24.19■■□□□ 1.46
VPS28-205ENST00000526204 PYM1Q9BRP8 204 aaKnown RBP24.19■■□□□ 1.46
VPS28-205ENST00000526204 GOLGA6L9A6NEM1 432 aa24.18■■□□□ 1.46
VPS28-205ENST00000526204 KLRK1P26718 216 aa24.18■■□□□ 1.46
VPS28-205ENST00000526204 ATP2C1P98194 919 aaPredicted RBP24.18■■□□□ 1.46
VPS28-205ENST00000526204 SPTY2D1Q68D10 685 aaPredicted RBP24.18■■□□□ 1.46
VPS28-205ENST00000526204 TRMT44Q8IYL2 757 aaKnown RBP24.18■■□□□ 1.46
VPS28-205ENST00000526204 BAG1Q99933 345 aaPredicted RBP24.18■■□□□ 1.46
VPS28-205ENST00000526204 MYH6P13533 1939 aa24.18■■□□□ 1.46
VPS28-205ENST00000526204 A0A087X0B3 334 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 SCG2P13521 617 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 KIF5BP33176 963 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 SPATA1Q5VX52 437 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 TPTE2Q6XPS3 522 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 DLEC1Q9Y238 1755 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 RPS6KA4O75676 772 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 ZNF174Q15697 407 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 MED15Q96RN5 788 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 MYH2Q9UKX2 1941 aa24.17■■□□□ 1.46
VPS28-205ENST00000526204 TOM1O60784 492 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 NLRP5P59047 1200 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 NR1I3Q14994 352 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 PFKFB3Q16875 520 aaPredicted RBP24.16■■□□□ 1.46
VPS28-205ENST00000526204 HSP90AA4PQ58FG1 418 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 REXO1L1PQ8IX06 675 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 SAMSN1Q9NSI8 373 aaKnown RBP24.16■■□□□ 1.46
VPS28-205ENST00000526204 TFCP2L1Q9NZI6 479 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 BAZ2AQ9UIF9 1905 aaKnown RBP24.16■■□□□ 1.46
VPS28-205ENST00000526204 A0A1B0GTH6 734 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 TSPY2A6NKD2 308 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 PRDX5P30044 214 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 AFMP43652 599 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 DPYDQ12882 1025 aa24.16■■□□□ 1.46
VPS28-205ENST00000526204 PTGDRQ13258 359 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms