RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 METTL16Q86W50 562 aaKnown RBP6.95□□□□□ -1.3
CD44-217ENST00000525348 SLFN12Q8IYM2 578 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 Q96M66 194 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 HSPA12BQ96MM6 686 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 CEP131Q9UPN4 1083 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 ST14Q9Y5Y6 855 aa6.95□□□□□ -1.3
CD44-217ENST00000525348 ATE1O95260 518 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 CLCN7P51798 805 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 YARSP54577 528 aaKnown RBP6.94□□□□□ -1.3
CD44-217ENST00000525348 CLCQ05315 142 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 TNK2Q07912 1038 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 PLCL1Q15111 1095 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 CDKAL1Q5VV42 579 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 USP48Q86UV5 1035 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 KIAA0825Q8IV33 1275 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 AGBL5Q8NDL9 886 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 BAHD1Q8TBE0 780 aaPredicted RBP6.94□□□□□ -1.3
CD44-217ENST00000525348 RNF34Q969K3 372 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 SPON2Q9BUD6 331 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 NT5C1AQ9BXI3 368 aa6.94□□□□□ -1.3
CD44-217ENST00000525348 SLC22A31A6NKX4 558 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 SCAMP3O14828 347 aaKnown RBP6.93□□□□□ -1.3
CD44-217ENST00000525348 TAL1P17542 331 aaPredicted RBP6.93□□□□□ -1.3
CD44-217ENST00000525348 APOBRQ0VD83 1088 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 ZNF792Q3KQV3 632 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 ZNF746Q6NUN9 644 aaPredicted RBP6.93□□□□□ -1.3
CD44-217ENST00000525348 SLITRK4Q8IW52 837 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 KIF2CQ99661 725 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 ANTXR1Q9H6X2 564 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 EHMT1Q9H9B1 1298 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 ATP13A1Q9HD20 1204 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 PRDM7Q9NQW5 492 aa6.93□□□□□ -1.3
CD44-217ENST00000525348 MBNL3Q9NUK0 354 aaKnown RBP6.93□□□□□ -1.3
CD44-217ENST00000525348 FAM155AB1AL88 458 aaPredicted RBP6.92□□□□□ -1.3
CD44-217ENST00000525348 H3BS24 57 aa6.92□□□□□ -1.3
CD44-217ENST00000525348 LRRN2O75325 713 aa6.92□□□□□ -1.3
CD44-217ENST00000525348 ETV3P41162 512 aa6.92□□□□□ -1.3
CD44-217ENST00000525348 HDLBPQ00341 1268 aaKnown RBP6.92□□□□□ -1.3
CD44-217ENST00000525348 ARSHQ5FYA8 562 aa6.92□□□□□ -1.3
CD44-217ENST00000525348 KRTAP4-8Q9BYQ9 185 aa6.92□□□□□ -1.3
CD44-217ENST00000525348 DDX41Q9UJV9 622 aaKnown RBP6.92□□□□□ -1.3
CD44-217ENST00000525348 WASH4PA8MWX3 477 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 RNASE1P07998 156 aaKnown RBP6.91□□□□□ -1.3
CD44-217ENST00000525348 CYP7A1P22680 504 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 POLR2BP30876 1174 aaKnown RBP6.91□□□□□ -1.3
CD44-217ENST00000525348 KIR3DL1P43629 444 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 IKZF1Q13422 519 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 ANGEL2Q5VTE6 544 aaKnown RBP6.91□□□□□ -1.3
CD44-217ENST00000525348 OVOS1Q6IE37 1185 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 GK5Q6ZS86 529 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 ASB11Q8WXH4 323 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 NKD1Q969G9 470 aa6.91□□□□□ -1.3
CD44-217ENST00000525348 UBOX5O94941 541 aa6.9□□□□□ -1.3
CD44-217ENST00000525348 C9orf131Q5VYM1 1079 aa6.9□□□□□ -1.3
CD44-217ENST00000525348 REXO1Q8N1G1 1221 aaKnown RBP6.9□□□□□ -1.3
CD44-217ENST00000525348 ZNF428Q96B54 188 aa6.9□□□□□ -1.3
CD44-217ENST00000525348 COX4I2Q96KJ9 171 aa6.9□□□□□ -1.3
CD44-217ENST00000525348 GMIPQ9P107 970 aa6.9□□□□□ -1.3
CD44-217ENST00000525348 ITGB5P18084 799 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 MCM4P33991 863 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 ZP2Q05996 745 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 PHACTR4Q8IZ21 702 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 DTWD2Q8NBA8 298 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 LRRN4CLQ8ND94 238 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 RNF141Q8WVD5 230 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 UBE2FQ969M7 185 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 VWCEQ96DN2 955 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 ATG4CQ96DT6 458 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 CCDC74BQ96LY2 380 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 KREMEN1Q96MU8 473 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 DUSP15Q9H1R2 295 aaPredicted RBP6.89□□□□□ -1.31
CD44-217ENST00000525348 CNNM2Q9H8M5 875 aa6.89□□□□□ -1.31
CD44-217ENST00000525348 CCDC9Q9Y3X0 531 aaKnown RBP6.89□□□□□ -1.31
CD44-217ENST00000525348 RGS13O14921 159 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 ZNF165P49910 485 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 CDCP2Q5VXM1 449 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 THAP5Q7Z6K1 395 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 PIWIL2Q8TC59 973 aaKnown RBP6.88□□□□□ -1.31
CD44-217ENST00000525348 PI4K2BQ8TCG2 481 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 CARS2Q9HA77 564 aaKnown RBP6.88□□□□□ -1.31
CD44-217ENST00000525348 RC3H2Q9HBD1 1191 aaKnown RBP6.88□□□□□ -1.31
CD44-217ENST00000525348 ZSWIM5Q9P217 1185 aa6.88□□□□□ -1.31
CD44-217ENST00000525348 MEIS3P2A8K0S8 358 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 PAPLNO95428 1278 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 ESR1P03372 595 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 SRFP11831 508 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 TNNI2P48788 182 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 PAK2Q13177 524 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 SLC23A3Q6PIS1 610 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 NT5DC4Q86YG4 428 aa6.87□□□□□ -1.31
CD44-217ENST00000525348 RAG1P15918 1043 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 MLECQ14165 292 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 GAB4Q2WGN9 574 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 NLRC3Q7RTR2 1065 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 ZNF654Q8IZM8 581 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 TMEM40Q8WWA1 233 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 ZNRF3Q9ULT6 936 aa6.86□□□□□ -1.31
CD44-217ENST00000525348 SHISA3A0PJX4 238 aa6.85□□□□□ -1.31
CD44-217ENST00000525348 NME1P15531 152 aaKnown RBP6.85□□□□□ -1.31
CD44-217ENST00000525348 GBP1P32455 592 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms