RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 IL17RAQ96F46 866 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 WRNIP1Q96S55 665 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.92□□□□□ -0.66
SDCBP-212ENST00000523483 IKQ13123 557 aaPredicted RBP10.92□□□□□ -0.66
SDCBP-212ENST00000523483 FKBP1CQ5VVH2 108 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 CTCFLQ8NI51 663 aaPredicted RBP10.92□□□□□ -0.66
SDCBP-212ENST00000523483 GTF3C6Q969F1 213 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 FEZ1Q99689 392 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 CPVLQ9H3G5 476 aa10.92□□□□□ -0.66
SDCBP-212ENST00000523483 HERC5Q9UII4 1024 aaKnown RBP10.92□□□□□ -0.66
SDCBP-212ENST00000523483 VPS37CA5D8V6 355 aaPredicted RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 GJB2P29033 226 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 INPP5BP32019 993 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 FMR1Q06787 632 aaKnown RBP eCLIP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 RRP1BQ14684 758 aaKnown RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 RTN1Q16799 776 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 TMTC2Q8N394 836 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 NEDD1Q8NHV4 660 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 ZKSCAN4Q969J2 545 aaPredicted RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 TMEM47Q9BQJ4 181 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 EHD4Q9H223 541 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 BAZ2BQ9UIF8 2168 aaKnown RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 ROBO3Q96MS0 1386 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 FGRP09769 529 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 VEGFAP15692 232 aaPredicted RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 LIFRP42702 1097 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 GUCY1B3Q02153 619 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 CCDC96Q2M329 555 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 CPLX2Q6PUV4 134 aaKnown RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 VAT1LQ9HCJ6 419 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 TIAM2Q8IVF5 1701 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 FRMPD2Q68DX3 1309 aaPredicted RBP10.91□□□□□ -0.66
SDCBP-212ENST00000523483 JAG1P78504 1218 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 SEC23AQ15436 765 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 TPRNQ4KMQ1 711 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 PSME4Q14997 1843 aa10.91□□□□□ -0.66
SDCBP-212ENST00000523483 EEF2P13639 858 aaKnown RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 CDC27P30260 824 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 ST3GAL1Q11201 340 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 USP50Q70EL3 339 aaPredicted RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 MOB2Q70IA6 237 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 L3MBTL3Q96JM7 780 aaPredicted RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 CCDC17Q96LX7 622 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 TEPSINQ96N21 525 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 MTMR4Q9NYA4 1195 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 ATRNL1Q5VV63 1379 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 PTPDC1A2A3K4 754 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 TRAF5O00463 557 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 NPM3O75607 178 aaKnown RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 TTLL1O95922 423 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 MMP14P50281 582 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 PKP1Q13835 747 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 DCAF15Q66K64 600 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 RCSD1Q6JBY9 416 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 USP17L2Q6R6M4 530 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 PNMA8AQ86V59 439 aaPredicted RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 ZNF274Q96GC6 653 aaPredicted RBP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.9□□□□□ -0.66
SDCBP-212ENST00000523483 SLC26A6Q9BXS9 759 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 GPCPD1Q9NPB8 672 aa10.9□□□□□ -0.66
SDCBP-212ENST00000523483 PFKFB2O60825 505 aa10.9□□□□□ -0.67
SDCBP-212ENST00000523483 SUPT20HL1Q3ZLR7 823 aa10.9□□□□□ -0.67
SDCBP-212ENST00000523483 HOMER1Q86YM7 354 aa10.9□□□□□ -0.67
SDCBP-212ENST00000523483 FANCBQ8NB91 859 aa10.9□□□□□ -0.67
SDCBP-212ENST00000523483 HPS5Q9UPZ3 1129 aa10.9□□□□□ -0.67
SDCBP-212ENST00000523483 NF2P35240 595 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 ECE1P42892 770 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 AKAP17AQ02040 695 aaKnown RBP10.89□□□□□ -0.67
SDCBP-212ENST00000523483 TMEM179Q6ZVK1 233 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 SGMS1Q86VZ5 419 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 AGXT2Q9BYV1 514 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 ZBTB21Q9ULJ3 1066 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 CDK5RAP2Q96SN8 1893 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 ZNF646O15015 1829 aaPredicted RBP10.89□□□□□ -0.67
SDCBP-212ENST00000523483 POTECB2RU33 542 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 UBE2Q2LH0YL09 131 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 PPP1R12BO60237 982 aaPredicted RBP10.89□□□□□ -0.67
SDCBP-212ENST00000523483 PLEKHA8P1O95397 391 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 DGKHQ86XP1 1220 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 KANSL2Q9H9L4 492 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 DICER1Q9UPY3 1922 aaKnown RBP10.89□□□□□ -0.67
SDCBP-212ENST00000523483 WDR19Q8NEZ3 1342 aa10.89□□□□□ -0.67
SDCBP-212ENST00000523483 ZC3H4Q9UPT8 1303 aaKnown RBP10.89□□□□□ -0.67
SDCBP-212ENST00000523483 H3BQV1 296 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 TOP1P11387 765 aaKnown RBP10.88□□□□□ -0.67
SDCBP-212ENST00000523483 IFFO2Q5TF58 517 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 LARP1BQ659C4 914 aaKnown RBP10.88□□□□□ -0.67
SDCBP-212ENST00000523483 MCTP1Q6DN14 999 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 KCTD1Q719H9 257 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 FERMT3Q86UX7 667 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 STAG2Q8N3U4 1231 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 ACER1Q8TDN7 264 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 NUP88Q99567 741 aaPredicted RBP10.88□□□□□ -0.67
SDCBP-212ENST00000523483 PICK1Q9NRD5 415 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 ORC3Q9UBD5 711 aaPredicted RBP10.88□□□□□ -0.67
SDCBP-212ENST00000523483 LAMA4Q16363 1823 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 USP17L5A8MUK1 530 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 CAP2P40123 477 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 TATDN1Q6P1N9 297 aa10.88□□□□□ -0.67
SDCBP-212ENST00000523483 UBA5Q9GZZ9 404 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms