RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 SBK1Q52WX2 424 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 AMOTL1Q8IY63 956 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 ACER1Q8TDN7 264 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 ZNF333Q96JL9 665 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 FSD1Q9BTV5 496 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 EPB41L4AQ9HCS5 686 aaPredicted RBP17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 MORF4L1Q9UBU8 362 aa17.8■□□□□ 0.44
HMGCLL1-209ENST00000515546 FMNL1O95466 1100 aaPredicted RBP17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 GNAT2P19087 354 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 USP14P54578 494 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 IRX3P78415 501 aaPredicted RBP17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 ZMYM1Q5SVZ6 1142 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 TMEM179Q6ZVK1 233 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 ANKRD13CQ8N6S4 541 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 FEZ1Q99689 392 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 LNPKQ9C0E8 428 aa17.79■□□□□ 0.44
HMGCLL1-209ENST00000515546 MYH8P13535 1937 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 MYPNQ86TC9 1320 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 AKR1B1P15121 316 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 HOXD10P28358 340 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 CDK8P49336 464 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 HERVK_113P62684 666 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 NUCB1Q02818 461 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 MLLT1Q03111 559 aaPredicted RBP17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 SLC9C1Q4G0N8 1177 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 CCDC17Q96LX7 622 aa17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 GREB1LQ9C091 1923 aaPredicted RBP17.78■□□□□ 0.44
HMGCLL1-209ENST00000515546 A0A1W2PRG0 241 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 MPHOSPH10O00566 681 aaKnown RBP17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 VCAM1P19320 739 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 PRKCZQ05513 592 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 CHD1LQ86WJ1 897 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 TICAM2Q86XR7 235 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 EVI5LQ96CN4 794 aa17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 P2RX7Q99572 595 aaKnown RBP17.77■□□□□ 0.44
HMGCLL1-209ENST00000515546 ECM2O94769 699 aaPredicted RBP17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 ZYXQ15942 572 aaKnown RBP17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 POTEEQ6S8J3 1075 aa17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 SIAH1Q8IUQ4 282 aa17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 GTF3C2Q8WUA4 911 aaPredicted RBP17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 SEC62Q99442 399 aaKnown RBP17.76■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L15C9J2P7 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L13C9JLJ4 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L11C9JVI0 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L18D6R9N7 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L22D6RA61 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L17D6RBQ6 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L19D6RCP7 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L20D6RJB6 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 TNPO2O14787 897 aaKnown RBP17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 USP17L24Q0WX57 530 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 B4GALNT3Q6L9W6 998 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 NBPF11Q86T75 865 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 SH3TC2Q8TF17 1288 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 OSBPL3Q9H4L5 887 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 TXNRD2Q9NNW7 524 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 GABRQQ9UN88 632 aa17.75■□□□□ 0.43
HMGCLL1-209ENST00000515546 PATL2C9JE40 543 aaKnown RBP17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 FOXP2O15409 715 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 TDO2P48775 406 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 ICA1Q05084 483 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 IRF5Q13568 498 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 LBX2Q6XYB7 198 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 CATSPERGQ6ZRH7 1159 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 CLEC10AQ8IUN9 316 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 IFNL3Q8IZI9 196 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 RAET1EQ8TD07 263 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 RBPJLQ9UBG7 517 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 TMX2Q9Y320 296 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 A0A0G2JMZ2 1700 aa17.74■□□□□ 0.43
HMGCLL1-209ENST00000515546 POTEFA5A3E0 1075 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 RASA1P20936 1047 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 GRK4P32298 578 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 FLT3LGP49771 235 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 PLEKHM2Q8IWE5 1019 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 SLAIN1Q8ND83 568 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 NACAP1Q9BZK3 213 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 ARHGEF10LQ9HCE6 1279 aa17.73■□□□□ 0.43
HMGCLL1-209ENST00000515546 KIAA1755Q5JYT7 1200 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 GPRC5AQ8NFJ5 357 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 LPAR1Q92633 364 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 COA7Q96BR5 231 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 RPAP3Q9H6T3 665 aaPredicted RBP17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 SH2D4AQ9H788 454 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 KANSL2Q9H9L4 492 aa17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 KIAA0100Q14667 2235 aaKnown RBP17.72■□□□□ 0.43
HMGCLL1-209ENST00000515546 PLIN4Q96Q06 1357 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 PLXNB2O15031 1838 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 SPDYE16A6NNV3 312 aaPredicted RBP17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 MINDY4BA8MYZ0 360 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 PEX10O60683 326 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 CNMDO75829 334 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 APPP05067 770 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 ERVK-9P63128 1117 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 ERVK-24P63145 666 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 CCDC129Q6ZRS4 1044 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 PXYLP1Q8TE99 480 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 VCPKMTQ9H867 229 aa17.71■□□□□ 0.43
HMGCLL1-209ENST00000515546 HELLSQ9NRZ9 838 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms