RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 TAOK2Q9UL54 1235 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 SLC45A1Q9Y2W3 748 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 FLT1P17948 1338 aa24.01■■□□□ 1.43
USP53-208ENST00000514305 FOCADQ5VW36 1801 aa24■■□□□ 1.43
USP53-208ENST00000514305 TRIM75PA6NK02 468 aa24■■□□□ 1.43
USP53-208ENST00000514305 POLR3DP05423 398 aaPredicted RBP24■■□□□ 1.43
USP53-208ENST00000514305 SLURP2P0DP57 97 aa24■■□□□ 1.43
USP53-208ENST00000514305 TRIM47Q96LD4 638 aa24■■□□□ 1.43
USP53-208ENST00000514305 TRIM34Q9BYJ4 488 aa24■■□□□ 1.43
USP53-208ENST00000514305 SRRDQ9UH36 339 aa24■■□□□ 1.43
USP53-208ENST00000514305 FAM196BA6NMK8 535 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 SGSM2O43147 1006 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 MYCP01106 439 aaPredicted RBP23.99■■□□□ 1.43
USP53-208ENST00000514305 TDO2P48775 406 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 RAET1EQ8TD07 263 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 SDR42E1Q8WUS8 393 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 NAPBQ9H115 298 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 DCP1AQ9NPI6 582 aaPredicted RBP23.99■■□□□ 1.43
USP53-208ENST00000514305 MCM9Q9NXL9 1143 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 PI4KBQ9UBF8 816 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 ARPP21Q9UBL0 812 aaPredicted RBP23.99■■□□□ 1.43
USP53-208ENST00000514305 BRCA2P51587 3418 aa23.99■■□□□ 1.43
USP53-208ENST00000514305 OSBPP22059 807 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 FCGRTP55899 365 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 SMCR8Q8TEV9 937 aaPredicted RBP23.98■■□□□ 1.43
USP53-208ENST00000514305 ESYT1Q9BSJ8 1104 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 DSCC1Q9BVC3 393 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.98■■□□□ 1.43
USP53-208ENST00000514305 CTNNA3Q9UI47 895 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 HERC5Q9UII4 1024 aaKnown RBP23.98■■□□□ 1.43
USP53-208ENST00000514305 MYPNQ86TC9 1320 aa23.98■■□□□ 1.43
USP53-208ENST00000514305 BCRP11274 1271 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 CTGFP29279 349 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 ALX1Q15699 326 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 CCDC129Q6ZRS4 1044 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 FOXP4Q8IVH2 680 aaPredicted RBP23.97■■□□□ 1.43
USP53-208ENST00000514305 IFNL3Q8IZI9 196 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 TBC1D2Q9BYX2 928 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 AGTPBP1Q9UPW5 1226 aa23.97■■□□□ 1.43
USP53-208ENST00000514305 LOC285556D6RIA3 1793 aa23.96■■□□□ 1.43
USP53-208ENST00000514305 GSG1L2A8MUP6 293 aa23.96■■□□□ 1.43
USP53-208ENST00000514305 PRKAB2O43741 272 aa23.96■■□□□ 1.43
USP53-208ENST00000514305 SLC3A2P08195 630 aaKnown RBP23.96■■□□□ 1.43
USP53-208ENST00000514305 HSPD1P10809 573 aaKnown RBP23.96■■□□□ 1.43
USP53-208ENST00000514305 CCDC84Q86UT8 332 aaPredicted RBP23.96■■□□□ 1.43
USP53-208ENST00000514305 ZNF287Q9HBT7 754 aa23.96■■□□□ 1.43
USP53-208ENST00000514305 PNMA3Q9UL41 463 aa23.96■■□□□ 1.43
USP53-208ENST00000514305 MKI67P46013 3256 aaKnown RBP23.96■■□□□ 1.43
USP53-208ENST00000514305 REC8O95072 547 aa23.95■■□□□ 1.42
USP53-208ENST00000514305 SBK1Q52WX2 424 aa23.95■■□□□ 1.42
USP53-208ENST00000514305 ZNF589Q86UQ0 364 aaPredicted RBP23.95■■□□□ 1.42
USP53-208ENST00000514305 CRACR2BQ8N4Y2 399 aaPredicted RBP23.95■■□□□ 1.42
USP53-208ENST00000514305 SIPA1L1O43166 1804 aa23.95■■□□□ 1.42
USP53-208ENST00000514305 ZMYM6O95789 1325 aa23.94■■□□□ 1.42
USP53-208ENST00000514305 GRK4P32298 578 aa23.94■■□□□ 1.42
USP53-208ENST00000514305 CAP2P40123 477 aa23.94■■□□□ 1.42
USP53-208ENST00000514305 PROCA1Q8NCQ7 364 aaPredicted RBP23.94■■□□□ 1.42
USP53-208ENST00000514305 ZNF280CQ8ND82 737 aa23.94■■□□□ 1.42
USP53-208ENST00000514305 AS3MTQ9HBK9 375 aa23.94■■□□□ 1.42
USP53-208ENST00000514305 SAP30BPQ9UHR5 308 aaKnown RBP23.94■■□□□ 1.42
USP53-208ENST00000514305 USP17L5A8MUK1 530 aa23.93■■□□□ 1.42
USP53-208ENST00000514305 SPP2Q13103 211 aa23.93■■□□□ 1.42
USP53-208ENST00000514305 BIN2Q9UBW5 565 aaPredicted RBP23.93■■□□□ 1.42
USP53-208ENST00000514305 PALD1Q9ULE6 856 aa23.93■■□□□ 1.42
USP53-208ENST00000514305 MYH1P12882 1939 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 USP17L12C9JPN9 530 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 USP17L21D6R901 530 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 PRKCZQ05513 592 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 PABPC4Q13310 644 aaKnown RBP eCLIP23.92■■□□□ 1.42
USP53-208ENST00000514305 EHD4Q9H223 541 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 ANO2Q9NQ90 1003 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 SERPINB13Q9UIV8 391 aa23.92■■□□□ 1.42
USP53-208ENST00000514305 MINDY4BA8MYZ0 360 aa23.91■■□□□ 1.42
USP53-208ENST00000514305 EPB41L2O43491 1005 aaKnown RBP23.91■■□□□ 1.42
USP53-208ENST00000514305 UBXN2AP68543 259 aa23.91■■□□□ 1.42
USP53-208ENST00000514305 TREML2Q5T2D2 321 aa23.91■■□□□ 1.42
USP53-208ENST00000514305 CTR9Q6PD62 1173 aa23.91■■□□□ 1.42
USP53-208ENST00000514305 SWAP70Q9UH65 585 aa23.91■■□□□ 1.42
USP53-208ENST00000514305 TNPO2O14787 897 aaKnown RBP23.9■■□□□ 1.42
USP53-208ENST00000514305 FGAP02671 866 aa23.9■■□□□ 1.42
USP53-208ENST00000514305 ASNSP08243 561 aa23.9■■□□□ 1.42
USP53-208ENST00000514305 HMGCS2P54868 508 aa23.9■■□□□ 1.42
USP53-208ENST00000514305 IMMTQ16891 758 aaKnown RBP23.9■■□□□ 1.42
USP53-208ENST00000514305 C12orf60Q5U649 245 aa23.9■■□□□ 1.42
USP53-208ENST00000514305 SLAIN1Q8ND83 568 aa23.9■■□□□ 1.42
USP53-208ENST00000514305 ZNF213O14771 459 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 PDE4BQ07343 736 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 MTFR1Q15390 333 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 VPS53Q5VIR6 699 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 ANKRD13CQ8N6S4 541 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 NKX2-3Q8TAU0 364 aa23.89■■□□□ 1.41
USP53-208ENST00000514305 NT5C2P49902 561 aa23.88■■□□□ 1.41
USP53-208ENST00000514305 RRP1BQ14684 758 aaKnown RBP23.88■■□□□ 1.41
USP53-208ENST00000514305 FAM110CQ1W6H9 321 aa23.88■■□□□ 1.41
USP53-208ENST00000514305 EPB41L4AQ9HCS5 686 aaPredicted RBP23.88■■□□□ 1.41
USP53-208ENST00000514305 GABRQQ9UN88 632 aa23.88■■□□□ 1.41
USP53-208ENST00000514305 PCP11498 1178 aaKnown RBP23.87■■□□□ 1.41
USP53-208ENST00000514305 GCLCP48506 637 aaPredicted RBP23.87■■□□□ 1.41
USP53-208ENST00000514305 RNF20Q5VTR2 975 aa23.87■■□□□ 1.41
USP53-208ENST00000514305 METTL16Q86W50 562 aaKnown RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms