RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 C12orf42Q96LP6 360 aa23.41■■□□□ 1.34
HMGCS1-206ENST00000511774 PRDM6Q9NQX0 595 aa23.41■■□□□ 1.34
HMGCS1-206ENST00000511774 ATP11BQ9Y2G3 1177 aa23.41■■□□□ 1.34
HMGCS1-206ENST00000511774 DNM1LO00429 736 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 HOXC6P09630 235 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 CYBAP13498 195 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 GRB14Q14449 540 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 WDR78Q5VTH9 848 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 GINM1Q9NU53 330 aa23.4■■□□□ 1.34
HMGCS1-206ENST00000511774 DYNLL1P63167 89 aaKnown RBP23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 ANO1Q5XXA6 986 aa23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 CATSPERGQ6ZRH7 1159 aa23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 SH3RF1Q7Z6J0 888 aa23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 ACER1Q8TDN7 264 aa23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 BADQ92934 168 aa23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 CWC22Q9HCG8 908 aaKnown RBP23.39■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L15C9J2P7 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L13C9JLJ4 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L11C9JVI0 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L18D6R9N7 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L22D6RA61 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L17D6RBQ6 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L19D6RCP7 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L20D6RJB6 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 CYP2E1P05181 493 aaPredicted RBP23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 ATP2B2Q01814 1243 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 USP17L24Q0WX57 530 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 SLC39A5Q6ZMH5 540 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 TRMT2AQ8IZ69 625 aaKnown RBP23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 NOL10Q9BSC4 688 aaKnown RBP23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 API5Q9BZZ5 524 aaKnown RBP23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 HDAC5Q9UQL6 1122 aa23.38■■□□□ 1.33
HMGCS1-206ENST00000511774 PNMA6EA0A0J9YXQ4 647 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 BAG3O95817 575 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 PLCG2P16885 1265 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 VCAM1P19320 739 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 TRIM34Q9BYJ4 488 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 SMCHD1A6NHR9 2005 aa23.37■■□□□ 1.33
HMGCS1-206ENST00000511774 ZNF236Q9UL36 1845 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 TRIM43BA6NCK2 446 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 SPDYE16A6NNV3 312 aaPredicted RBP23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 MSCO60682 206 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 UQCRFS1P1P0C7P4 283 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 CCNA1P78396 465 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 TRIM60Q495X7 471 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 LBX2Q6XYB7 198 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 TRIM43Q96BQ3 446 aaPredicted RBP23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 PIH1D3Q9NQM4 214 aaKnown RBP23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 PRDM5Q9NQX1 630 aaPredicted RBP23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 PDLIM7Q9NR12 457 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 PRKAG2Q9UGJ0 569 aa23.36■■□□□ 1.33
HMGCS1-206ENST00000511774 GLRX3O76003 335 aaKnown RBP23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 ITGB8P26012 769 aa23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 SNX17Q15036 470 aa23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 TATDN1Q6P1N9 297 aa23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 FEZ1Q99689 392 aa23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 DBNDD2Q9BQY9 259 aa23.35■■□□□ 1.33
HMGCS1-206ENST00000511774 SMAD3P84022 425 aaKnown RBP23.34■■□□□ 1.33
HMGCS1-206ENST00000511774 KIAA1683Q9H0B3 1180 aa23.34■■□□□ 1.33
HMGCS1-206ENST00000511774 TNNQ9UQP3 1299 aa23.34■■□□□ 1.33
HMGCS1-206ENST00000511774 GNAI3P08754 354 aa23.33■■□□□ 1.33
HMGCS1-206ENST00000511774 GUCY1A2P33402 732 aa23.33■■□□□ 1.33
HMGCS1-206ENST00000511774 EPHB4P54760 987 aa23.33■■□□□ 1.33
HMGCS1-206ENST00000511774 USP38Q8NB14 1042 aa23.33■■□□□ 1.33
HMGCS1-206ENST00000511774 A0A0G2JMZ2 1700 aa23.33■■□□□ 1.32
HMGCS1-206ENST00000511774 COBLO75128 1261 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 HLA-DOAP06340 250 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 ZAP70P43403 619 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 RAB3GAP1Q15042 981 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 PRAMEF19Q5SWL8 479 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 RPAP3Q9H6T3 665 aaPredicted RBP23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 IVNS1ABPQ9Y6Y0 642 aa23.32■■□□□ 1.32
HMGCS1-206ENST00000511774 FOSL2P15408 326 aa23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 ADORA2AP29274 412 aa23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 ADCYAP1R1P41586 468 aa23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 FERMT2Q96AC1 680 aa23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 MOV10L1Q9BXT6 1211 aaKnown RBP23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 ZNFX1Q9P2E3 1918 aaKnown RBP23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 NCOR1O75376 2440 aa23.31■■□□□ 1.32
HMGCS1-206ENST00000511774 CHD9Q3L8U1 2897 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 EVX2Q03828 476 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 G3BP1Q13283 466 aaKnown RBP eCLIP23.3■■□□□ 1.321e-7■□□□□ 8.9
HMGCS1-206ENST00000511774 TTC39AQ5SRH9 613 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 OLFML2BQ68BL8 750 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 MIGA1Q8NAN2 632 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 ARRDC4Q8NCT1 418 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 MYO9BQ13459 2157 aa23.3■■□□□ 1.32
HMGCS1-206ENST00000511774 KBTBD13C9JR72 458 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 MYCNP04198 464 aaPredicted RBP23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 CYP7A1P22680 504 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 SHMT1P34896 483 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 USP14P54578 494 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 LRRC41Q15345 812 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 TNNI3KQ59H18 835 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 FAM47AQ5JRC9 791 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 FPGT-TNNI3KV9GXZ4 949 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 BDP1A6H8Y1 2624 aa23.29■■□□□ 1.32
HMGCS1-206ENST00000511774 SEPT4O43236 478 aa23.28■■□□□ 1.32
HMGCS1-206ENST00000511774 RARSP54136 660 aaKnown RBP23.28■■□□□ 1.32
HMGCS1-206ENST00000511774 TLE2Q04725 743 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms