RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 ZNF18P17022 549 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 ERCC5P28715 1186 aaPredicted RBP20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 PLCD1P51178 756 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 FMR1Q06787 632 aaKnown RBP eCLIP20.47■□□□□ 0.876e-7■■□□□ 13.9
CCHCR1-228ENST00000509552 ZNF827Q17R98 1081 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 CT47A1Q5JQC4 288 aaPredicted RBP20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 SLC10A5Q5PT55 438 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 TMTC3Q6ZXV5 915 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 LINC00116Q8NCU8 138 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 CTCFLQ8NI51 663 aaPredicted RBP20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 DHX58Q96C10 678 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 NSUN4Q96CB9 384 aaKnown RBP20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 SHISA4Q96DD7 197 aa20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 BCL11BQ9C0K0 894 aaPredicted RBP20.47■□□□□ 0.87
CCHCR1-228ENST00000509552 FAM205CA6NFA0 338 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 RGL2O15211 777 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 ARHGAP6O43182 974 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 ETF1P62495 437 aaKnown RBP20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 HSP90AA4PQ58FG1 418 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 ZNF384Q8TF68 577 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 INTS13Q9NVM9 706 aa20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 COL5A3P25940 1745 aaPredicted RBP20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 BAZ2AQ9UIF9 1905 aaKnown RBP20.46■□□□□ 0.87
CCHCR1-228ENST00000509552 ORC4O43929 436 aa20.45■□□□□ 0.87
CCHCR1-228ENST00000509552 MECOMQ03112 1051 aa20.45■□□□□ 0.87
CCHCR1-228ENST00000509552 ZNF397Q8NF99 534 aaPredicted RBP20.45■□□□□ 0.87
CCHCR1-228ENST00000509552 NYXQ9GZU5 481 aa20.45■□□□□ 0.87
CCHCR1-228ENST00000509552 PDS5AQ29RF7 1337 aaKnown RBP20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 SLFN14P0C7P3 912 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 RPS8P62241 208 aaKnown RBP20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 SPECC1LQ69YQ0 1117 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 TRMT44Q8IYL2 757 aaKnown RBP20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 ANKRD2Q9GZV1 360 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 OGFRQ9NZT2 677 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 PHLPP2Q6ZVD8 1323 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 SCN7AQ01118 1682 aa20.45■□□□□ 0.86
CCHCR1-228ENST00000509552 HIBADHP31937 336 aaKnown RBP20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 TBX2Q13207 712 aaPredicted RBP20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 EARS2Q5JPH6 523 aaKnown RBP20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 EPSTI1Q96J88 318 aa20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 NLRP3Q96P20 1036 aa20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 ATP8A2Q9NTI2 1148 aa20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 V9GYY5 206 aaPredicted RBP20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 TBC1D9BQ66K14 1250 aa20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 TAF1P21675 1872 aa20.44■□□□□ 0.86
CCHCR1-228ENST00000509552 NUTM2BA6NNL0 878 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 NUTM2EB1AL46 878 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 TTC38Q5R3I4 469 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 SYMPKQ92797 1274 aaKnown RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 BAG1Q99933 345 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 DCP1AQ9NPI6 582 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 ARPP21Q9UBL0 812 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 AFMP43652 599 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 GOLGA8FQ08AF8 430 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 GOLGA8DPQ0D2H9 430 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 ZNF174Q15697 407 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 ELF2Q15723 593 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 PTPN21Q16825 1174 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 TMED8Q6PL24 325 aaPredicted RBP20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 DNAI1Q9UI46 699 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 CNTNAP5Q8WYK1 1306 aa20.43■□□□□ 0.86
CCHCR1-228ENST00000509552 CCDC93Q567U6 631 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 PAGE5Q96GU1 130 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 SETDB2Q96T68 719 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 SAMSN1Q9NSI8 373 aaKnown RBP20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 CNTNAP4Q9C0A0 1308 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 DLEC1Q9Y238 1755 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 STX10O60499 249 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 KLRK1P26718 216 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 SH3RF1Q7Z6J0 888 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 TMEM139Q8IV31 216 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 SRBD1Q8N5C6 995 aaKnown RBP20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 TNFRSF25Q93038 417 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 GSDMAQ96QA5 445 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 PRDM10Q9NQV6 1147 aa20.42■□□□□ 0.86
CCHCR1-228ENST00000509552 A0A087X0B3 334 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 GOLGA6L9A6NEM1 432 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 NLRP5P59047 1200 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 NBPF5PQ86XG9 351 aaPredicted RBP20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 REXO1L1PQ8IX06 675 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 TFCP2L1Q9NZI6 479 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.41■□□□□ 0.866e-8■□□□□ 9.4
CCHCR1-228ENST00000509552 ZNF831Q5JPB2 1677 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 TSPY2A6NKD2 308 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 SCG2P13521 617 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 SBK1Q52WX2 424 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 FAM47AQ5JRC9 791 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 SPATA1Q5VX52 437 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 PPP2R2CQ9Y2T4 447 aa20.41■□□□□ 0.86
CCHCR1-228ENST00000509552 VWA3AA6NCI4 1184 aa20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 TRAPPC10P48553 1259 aa20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 ATP2C1P98194 919 aaPredicted RBP20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 PTGDRQ13258 359 aa20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 NPY5RQ15761 445 aa20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 MED15Q96RN5 788 aa20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 PYM1Q9BRP8 204 aaKnown RBP20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 DDX41Q9UJV9 622 aaKnown RBP20.4■□□□□ 0.86
CCHCR1-228ENST00000509552 NMT2O60551 498 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms