RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 NCANO14594 1321 aa5.68□□□□□ -1.5
NUP54-208ENST00000508604 ETV2O00321 342 aaPredicted RBP5.68□□□□□ -1.5
NUP54-208ENST00000508604 HPXP02790 462 aa5.68□□□□□ -1.5
NUP54-208ENST00000508604 TPP2P29144 1249 aaPredicted RBP5.68□□□□□ -1.5
NUP54-208ENST00000508604 RPS26P62854 115 aaKnown RBP5.68□□□□□ -1.5
NUP54-208ENST00000508604 SLC6A19Q695T7 634 aa5.68□□□□□ -1.5
NUP54-208ENST00000508604 OXR1Q8N573 874 aa5.68□□□□□ -1.5
NUP54-208ENST00000508604 GPATCH2Q9NW75 528 aa5.68□□□□□ -1.5
NUP54-208ENST00000508604 SMG5Q9UPR3 1016 aaKnown RBP5.68□□□□□ -1.5
NUP54-208ENST00000508604 ESR1P03372 595 aa5.67□□□□□ -1.5
NUP54-208ENST00000508604 CCDC85BQ15834 202 aaPredicted RBP5.67□□□□□ -1.5
NUP54-208ENST00000508604 MRPL41Q8IXM3 137 aaKnown RBP5.67□□□□□ -1.5
NUP54-208ENST00000508604 DHX38Q92620 1227 aaKnown RBP5.67□□□□□ -1.5
NUP54-208ENST00000508604 ASB16Q96NS5 453 aa5.67□□□□□ -1.5
NUP54-208ENST00000508604 KCNH3Q9ULD8 1083 aa5.67□□□□□ -1.5
NUP54-208ENST00000508604 WWC3Q9ULE0 1092 aa5.67□□□□□ -1.5
NUP54-208ENST00000508604 KRTAP9-7A8MTY7 169 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 INHBBP09529 407 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 EIF4BP23588 611 aaKnown RBP5.66□□□□□ -1.5
NUP54-208ENST00000508604 CTSWP56202 376 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 ERVFC1P60507 584 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 LILRA2Q8N149 483 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 PDZD8Q8NEN9 1154 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 TMEM87BQ96K49 555 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 SETDB2Q96T68 719 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 MIR1-1HGQ9H1L0 117 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 SLC6A17Q9H1V8 727 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 ADAMTS10Q9H324 1103 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 DUSP13Q9UII6 198 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 SRFP11831 508 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 CDK8P49336 464 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 LINC00310P59036 64 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 TMEM132EQ6IEE7 984 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 DPH2Q9BQC3 489 aaPredicted RBP5.66□□□□□ -1.5
NUP54-208ENST00000508604 KCNK12Q9HB15 430 aa5.66□□□□□ -1.5
NUP54-208ENST00000508604 LDHBP07195 334 aaKnown RBP5.65□□□□□ -1.51
NUP54-208ENST00000508604 SEPT6Q14141 434 aa5.65□□□□□ -1.51
NUP54-208ENST00000508604 IRF2BP1Q8IU81 584 aa5.65□□□□□ -1.51
NUP54-208ENST00000508604 TJP2Q9UDY2 1190 aa5.65□□□□□ -1.51
NUP54-208ENST00000508604 FITM1A5D6W6 292 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 GFRA2O00451 464 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 LTKP29376 864 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 EGR3Q06889 387 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 SPPL2CQ8IUH8 684 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 MCATQ8IVS2 390 aaKnown RBP5.64□□□□□ -1.51
NUP54-208ENST00000508604 KRTAP4-11Q9BYQ6 195 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 RNF32Q9H0A6 362 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 CWC22Q9HCG8 908 aaKnown RBP5.64□□□□□ -1.51
NUP54-208ENST00000508604 ADAM30Q9UKF2 790 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 CEP131Q9UPN4 1083 aa5.64□□□□□ -1.51
NUP54-208ENST00000508604 RLBP1P12271 317 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 TSNAXIP1Q2TAA8 658 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 IRF2BPLQ9H1B7 796 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 PCDHB5Q9Y5E4 795 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 GNA15P30679 374 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 TRHRP34981 398 aaPredicted RBP5.63□□□□□ -1.51
NUP54-208ENST00000508604 AGMOQ6ZNB7 445 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 Q96M66 194 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 GPR62Q9BZJ7 368 aa5.63□□□□□ -1.51
NUP54-208ENST00000508604 DUSP15Q9H1R2 295 aaPredicted RBP5.63□□□□□ -1.51
NUP54-208ENST00000508604 SEMA7AO75326 666 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 PDE6BP35913 854 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 LIG3P49916 1009 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 RPL6Q02878 288 aaKnown RBP5.62□□□□□ -1.51
NUP54-208ENST00000508604 CHRNEQ04844 493 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 DUSP4Q13115 394 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 MAP3K11Q16584 847 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 ZNF605Q86T29 641 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 TSPYL5Q86VY4 417 aaPredicted RBP5.62□□□□□ -1.51
NUP54-208ENST00000508604 C19orf44Q9H6X5 657 aa5.62□□□□□ -1.51
NUP54-208ENST00000508604 WASH4PA8MWX3 477 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 PEX10O60683 326 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 ZGLP1P0C6A0 271 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 YARSP54577 528 aaKnown RBP5.61□□□□□ -1.51
NUP54-208ENST00000508604 CHMP4BP1P59074 171 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 GAB4Q2WGN9 574 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 FAM13CQ8NE31 585 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 DNAJB8Q8NHS0 232 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 ZCCHC4Q9H5U6 513 aa5.61□□□□□ -1.51
NUP54-208ENST00000508604 CNOT6Q9ULM6 557 aaKnown RBP5.61□□□□□ -1.51
NUP54-208ENST00000508604 RFXAPO00287 272 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 BPNT1O95861 308 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 P4HBP07237 508 aaKnown RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 BUD31P41223 144 aaPredicted RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 TNNI2P48788 182 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 DLG4P78352 724 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 SNX17Q15036 470 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 NR0B2Q15466 257 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 ZNF385BQ569K4 471 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 DTWD2Q8NBA8 298 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 BAHD1Q8TBE0 780 aaPredicted RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 CYB5D2Q8WUJ1 264 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 JARID2Q92833 1246 aaPredicted RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 ACSF2Q96CM8 615 aaPredicted RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 INTS4Q96HW7 963 aaKnown RBP5.6□□□□□ -1.51
NUP54-208ENST00000508604 MCOLN1Q9GZU1 580 aa5.6□□□□□ -1.51
NUP54-208ENST00000508604 PLCG1P19174 1290 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 HOXA5P20719 270 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 CLEC16AQ2KHT3 1053 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 ERICH6Q7L0X2 663 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms