RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SYNMO15061 1565 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 LTBP4Q8N2S1 1624 aa6.72□□□□□ -1.33
NUP54-206ENST00000508465 EFCAB6Q5THR3 1501 aa6.71□□□□□ -1.33
NUP54-206ENST00000508465 NEURL4Q96JN8 1562 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 LRRC10BA6NIK2 292 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 CD96P40200 585 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 OXCT1P55809 520 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 ZNF211Q13398 564 aaPredicted RBP6.71□□□□□ -1.34
NUP54-206ENST00000508465 TTLL4Q14679 1199 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 KIF4BQ2VIQ3 1234 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 MPHOSPH9Q99550 1183 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 DUSP23Q9BVJ7 150 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 NPHS2Q9NP85 383 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 SNX11Q9Y5W9 270 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 PIK3C2BO00750 1634 aa6.71□□□□□ -1.34
NUP54-206ENST00000508465 UBR1Q8IWV7 1749 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 TMEM238LA0A1B0GVL6 79 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 NDUFB5O43674 189 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 ZNF157P51786 506 aaPredicted RBP6.7□□□□□ -1.34
NUP54-206ENST00000508465 PPP2R3AQ06190 1150 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 PPP4R2Q9NY27 417 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 MED14O60244 1454 aa6.7□□□□□ -1.34
NUP54-206ENST00000508465 SCAF11Q99590 1463 aaKnown RBP6.7□□□□□ -1.34
NUP54-206ENST00000508465 UNC13BO14795 1591 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 HFM1A2PYH4 1435 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 RIMS2Q9UQ26 1411 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 E9PCH4 1651 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 TET3O43151 1660 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 RPRD2Q5VT52 1461 aaKnown RBP6.69□□□□□ -1.34
NUP54-206ENST00000508465 ARHGAP23Q9P227 1491 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 ZNF862O60290 1169 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 GADD45BO75293 160 aaPredicted RBP6.69□□□□□ -1.34
NUP54-206ENST00000508465 LEFTY1O75610 366 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 GSTP1P09211 210 aaKnown RBP6.69□□□□□ -1.34
NUP54-206ENST00000508465 HCLS1P14317 486 aaPredicted RBP6.69□□□□□ -1.34
NUP54-206ENST00000508465 KCNMB1Q16558 191 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 RGL3Q3MIN7 710 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 PRPF40BQ6NWY9 871 aaKnown RBP6.69□□□□□ -1.34
NUP54-206ENST00000508465 ZSWIM9Q86XI8 627 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 FLAD1Q8NFF5 587 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 ASB11Q8WXH4 323 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 ABCB6Q9NP58 842 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 EGFL7Q9UHF1 273 aa6.69□□□□□ -1.34
NUP54-206ENST00000508465 SLIT1O75093 1534 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 ICMTO60725 284 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 TOM1O60784 492 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 KCNA6P17658 529 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 MESP2Q0VG99 397 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 LCE4AQ5TA78 99 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 PHLDB3Q6NSJ2 640 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 GLYCTKQ8IVS8 523 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.68□□□□□ -1.34
NUP54-206ENST00000508465 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.68□□□□□ -1.34
NUP54-206ENST00000508465 KCNB2Q92953 911 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 CCDC74AQ96AQ1 378 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 TOX2Q96NM4 488 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 DNAJC25Q9H1X3 360 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 GTF2IRD1Q9UHL9 959 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 PLAGL2Q9UPG8 496 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 IQGAP3Q86VI3 1631 aa6.68□□□□□ -1.34
NUP54-206ENST00000508465 SETD5Q9C0A6 1442 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 POLR1AO95602 1720 aaPredicted RBP6.67□□□□□ -1.34
NUP54-206ENST00000508465 ITIH2P19823 946 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 RAP1GAPP47736 663 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 ORC1Q13415 861 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 MLANAQ16655 118 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 TOP6BLQ8N6T0 577 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 CITED4Q96RK1 184 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 PPP1R16BQ96T49 567 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 TNKS2Q9H2K2 1166 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 TBX22Q9Y458 520 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 PCDHGC5Q9Y5F6 944 aa6.67□□□□□ -1.34
NUP54-206ENST00000508465 ADGRB3O60242 1522 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 TMEM131LA2VDJ0 1609 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 IQGAP1P46940 1657 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 GCC2Q8IWJ2 1684 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 HSPA1LP34931 641 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 FAAP100Q0VG06 881 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 IKZF1Q13422 519 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 B4GALNT3Q6L9W6 998 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 DTHD1Q6ZMT9 781 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 ZSCAN18Q8TBC5 510 aaPredicted RBP6.66□□□□□ -1.34
NUP54-206ENST00000508465 TMEM39AQ9NV64 488 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 GPN3Q9UHW5 284 aaPredicted RBP6.66□□□□□ -1.34
NUP54-206ENST00000508465 TIMELESSQ9UNS1 1208 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 U3KQE9 123 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 MYO5BQ9ULV0 1848 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 RAB3GAP2Q9H2M9 1393 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 ZFYVE9O95405 1425 aa6.66□□□□□ -1.34
NUP54-206ENST00000508465 STRCP1A6NGW2 1772 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 H3BRB1 525 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 AFMP43652 599 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 ZP2Q05996 745 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 C14orf37Q86TY3 774 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 RNF214Q8ND24 703 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 TMC1Q8TDI8 760 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 ISL2Q96A47 359 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 KRTAP4-2Q9BYR5 136 aa6.65□□□□□ -1.34
NUP54-206ENST00000508465 TUT1Q9H6E5 874 aaKnown RBP6.65□□□□□ -1.34
NUP54-206ENST00000508465 PLEKHG1Q9ULL1 1385 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms