RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TRMT44Q8IYL2 757 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 BLIDQ8IZY5 108 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 CLIC6Q96NY7 704 aa12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.1□□□□□ -0.47
LIMCH1-205ENST00000503057 hCG_1642624A0A1W2PR95 340 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 HSF2BPO75031 334 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 LMAN1P49257 510 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 FOXO4P98177 505 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 PI16Q6UXB8 463 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 UTYO14607 1347 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 LIFRP42702 1097 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 HLTFQ14527 1009 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 SMAP1Q8IYB5 467 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 ATP8A2Q9NTI2 1148 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 SAMM50Q9Y512 469 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 STK24Q9Y6E0 443 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 SELENOOQ9BVL4 669 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 FAM107BQ9H098 131 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 BCL2L12Q9HB09 334 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 GPCPD1Q9NPB8 672 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 PIH1D3Q9NQM4 214 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 CABP7Q86V35 215 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 MAPKAPK5Q8IW41 473 aa12.09□□□□□ -0.47
LIMCH1-205ENST00000503057 MMP1P03956 469 aa12.08□□□□□ -0.47
LIMCH1-205ENST00000503057 MCAMP43121 646 aa12.08□□□□□ -0.47
LIMCH1-205ENST00000503057 IFFO1Q0D2I5 559 aa12.08□□□□□ -0.47
LIMCH1-205ENST00000503057 LMBR1Q8WVP7 490 aa12.08□□□□□ -0.47
LIMCH1-205ENST00000503057 FTOQ9C0B1 505 aaKnown RBP eCLIP12.08□□□□□ -0.47
LIMCH1-205ENST00000503057 MCM6Q14566 821 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 ELF2Q15723 593 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 IQCDQ96DY2 449 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 ISCA1Q9BUE6 129 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 TAOK3Q9H2K8 898 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 PSDA5PKW4 1024 aaPredicted RBP12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 KRT13P13646 458 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 IFNAR1P17181 557 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 PDLIM2Q96JY6 352 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 DRC1Q96MC2 740 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 TXKP42681 527 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 HAUS3Q68CZ6 603 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 OGFOD1Q8N543 542 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 BLZF1Q9H2G9 400 aa12.08□□□□□ -0.48
LIMCH1-205ENST00000503057 FAM13AO94988 1023 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 TRAPPC10P48553 1259 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 SEC31BQ9NQW1 1179 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 TAB2Q9NYJ8 693 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 LRWD1Q9UFC0 647 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 MAPK8IP1Q9UQF2 711 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 USP8P40818 1118 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 HDXQ7Z353 690 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 LCORLQ8N3X6 602 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 KIAA1524Q8TCG1 905 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 RNF216Q9NWF9 866 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 THRAP3Q9Y2W1 955 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 RPL13P26373 211 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 SSR1P43307 286 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 CHMP4BP1P59074 171 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 CALCRLQ16602 461 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 DPCR1Q3MIW9 517 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 USP37Q86T82 979 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 FCHSD1Q86WN1 690 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 CARD6Q9BX69 1037 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 FANCLQ9NW38 375 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 DESP17661 470 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 PRPHP41219 470 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 PNMA1Q8ND90 353 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 ZNF804BA4D1E1 1349 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 GTPBP6O43824 516 aaPredicted RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 LONP1P36776 959 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 SPATA1Q5VX52 437 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 MICALCLQ6ZW33 695 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 FMNL3Q8IVF7 1028 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 REXO1Q8N1G1 1221 aaKnown RBP12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 CAPZA3Q96KX2 299 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 NRBP1Q9UHY1 535 aa12.07□□□□□ -0.48
LIMCH1-205ENST00000503057 GOLGA6L10A0A0M3HER8 536 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 SEPT7Q16181 437 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 SYMPKQ92797 1274 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 GOPCQ9HD26 462 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 OPA1O60313 960 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 RHOXF2BP0C7M4 288 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 RASGRF1Q13972 1273 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 NBPF14Q5TI25 921 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 RHOXF2Q9BQY4 288 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 ZSWIM5Q9P217 1185 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 TRAF5O00463 557 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 ATP2B4P23634 1241 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 TAX1BP1Q86VP1 789 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 STRBPQ96SI9 672 aaKnown RBP12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 GOLGA6L7A0A1B0GV03 622 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 GCOM1H8Y6P7 765 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 MYZAPP0CAP1 466 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 ERCC5P28715 1186 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 KRT9P35527 623 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 MORC3Q14149 939 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 HLFQ16534 295 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 VWA3BQ502W6 1294 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 SARM1Q6SZW1 724 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 JAKMIP2Q96AA8 810 aa12.06□□□□□ -0.48
LIMCH1-205ENST00000503057 CSRNP2Q9H175 543 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms