RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 C15orf52Q6ZUT6 534 aaKnown RBP13.74□□□□□ -0.21
NUP54-202ENST00000502850 ZNF804AQ7Z570 1209 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 LRRC8AQ8IWT6 810 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 TRIML1Q8N9V2 468 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
NUP54-202ENST00000502850 OSBPL5Q9H0X9 879 aaPredicted RBP13.74□□□□□ -0.21
NUP54-202ENST00000502850 DCP1AQ9NPI6 582 aaPredicted RBP13.74□□□□□ -0.21
NUP54-202ENST00000502850 KCNJ14Q9UNX9 436 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 SRPRBQ9Y5M8 271 aaKnown RBP13.74□□□□□ -0.21
NUP54-202ENST00000502850 ROBO3Q96MS0 1386 aa13.74□□□□□ -0.21
NUP54-202ENST00000502850 UBR3Q6ZT12 1888 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 TRIM75PA6NK02 468 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 USP17L12C9JPN9 530 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 USP17L21D6R901 530 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 BAG3O95817 575 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 LDHCP07864 332 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 TROAPQ12815 778 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 HSP90AA2PQ14568 343 aaPredicted RBP13.73□□□□□ -0.21
NUP54-202ENST00000502850 TMTC3Q6ZXV5 915 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 FAM177A1Q8N128 213 aaPredicted RBP13.73□□□□□ -0.21
NUP54-202ENST00000502850 CNBD1Q8NA66 436 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 FERMT2Q96AC1 680 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 PYM1Q9BRP8 204 aaKnown RBP13.73□□□□□ -0.21
NUP54-202ENST00000502850 PHF20Q9BVI0 1012 aa13.73□□□□□ -0.21
NUP54-202ENST00000502850 AATFQ9NY61 560 aaKnown RBP eCLIP13.73□□□□□ -0.21
NUP54-202ENST00000502850 FBXO2Q9UK22 296 aaPredicted RBP13.73□□□□□ -0.21
NUP54-202ENST00000502850 LDHBP07195 334 aaKnown RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 TRAPPC10P48553 1259 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 CT47A1Q5JQC4 288 aaPredicted RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 STK11IPQ8N1F8 1099 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 ZNF384Q8TF68 577 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 CACTINQ8WUQ7 758 aaKnown RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 ZNF287Q9HBT7 754 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 IRS2Q9Y4H2 1338 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 KIF2AO00139 706 aaPredicted RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 SMC2O95347 1197 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 TM4SF1P30408 202 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 KCNJ6P48051 423 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 TOB1P50616 345 aaPredicted RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 FUT2Q10981 343 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 CCDC144BQ3MJ40 725 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 MSL1Q68DK7 614 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 C17orf53Q8N3J3 647 aaPredicted RBP13.72□□□□□ -0.21
NUP54-202ENST00000502850 KCND1Q9NSA2 647 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 ANKIB1Q9P2G1 1089 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 NRBP1Q9UHY1 535 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 PAXBP1Q9Y5B6 917 aa13.72□□□□□ -0.21
NUP54-202ENST00000502850 CNTNAP5Q8WYK1 1306 aa13.71□□□□□ -0.21
NUP54-202ENST00000502850 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.71□□□□□ -0.22
NUP54-202ENST00000502850 TSPY2A6NKD2 308 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 BIN1O00499 593 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 KLRK1P26718 216 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 CALML3P27482 149 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 GNAQP50148 359 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 ST5P78524 1137 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 LRMPQ12912 555 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 POSTNQ15063 836 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 NT5DC1Q5TFE4 455 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 METTL16Q86W50 562 aaKnown RBP13.71□□□□□ -0.22
NUP54-202ENST00000502850 MLKLQ8NB16 471 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 ERCC4Q92889 916 aaPredicted RBP13.71□□□□□ -0.22
NUP54-202ENST00000502850 CLIC6Q96NY7 704 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 PDCL3Q9H2J4 239 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 TAOK2Q9UL54 1235 aa13.71□□□□□ -0.22
NUP54-202ENST00000502850 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.7□□□□□ -0.22
NUP54-202ENST00000502850 CCP110O43303 1012 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 PRDX5P30044 214 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 USP5P45974 858 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 NR5A1Q13285 461 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 PNOCQ13519 176 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 NCAPHQ15003 741 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 PKN1Q16512 942 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 LONRF3Q496Y0 759 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 FILIP1Q7Z7B0 1213 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 AMIGO3Q86WK7 504 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 DGKHQ86XP1 1220 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 CCDC82Q8N4S0 544 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 RPGRQ92834 1020 aaKnown RBP13.7□□□□□ -0.22
NUP54-202ENST00000502850 SMARCE1Q969G3 411 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 FBXW7Q969H0 707 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 KAT14Q9H8E8 782 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 CABP5Q9NP86 173 aa13.7□□□□□ -0.22
NUP54-202ENST00000502850 CYP2D7A0A087X1C5 515 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 PRDM1O75626 825 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 TUBB4AP04350 444 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 SKILP12757 684 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 PLCG2P16885 1265 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 SFPQP23246 707 aaKnown RBP eCLIP13.69□□□□□ -0.22
NUP54-202ENST00000502850 PPP4CP60510 307 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 GPR162Q16538 588 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 TPD52L1Q16890 204 aaPredicted RBP13.69□□□□□ -0.22
NUP54-202ENST00000502850 SMIM5Q71RC9 77 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 SLF2Q8IX21 1173 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 CCDC112Q8NEF3 446 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 ANKS1AQ92625 1134 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 XPO4Q9C0E2 1151 aaKnown RBP13.69□□□□□ -0.22
NUP54-202ENST00000502850 SH3GLB2Q9NR46 395 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 MCM9Q9NXL9 1143 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 IFNKQ9P0W0 207 aa13.69□□□□□ -0.22
NUP54-202ENST00000502850 VPS54Q9P1Q0 977 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms