RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 FBXL18Q96ME1 805 aa9.03□□□□□ -0.96
CCDC39-207ENST00000495817 CCDC39Q9UFE4 941 aa9.03□□□□□ -0.96
CCDC39-207ENST00000495817 TPX2Q9ULW0 747 aaKnown RBP9.03□□□□□ -0.96
CCDC39-207ENST00000495817 TMEM265A0A087WTH1 108 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 GRIN3BO60391 1043 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 ATF4P18848 351 aaPredicted RBP9.02□□□□□ -0.97
CCDC39-207ENST00000495817 SLITRK4Q8IW52 837 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 PLD6Q8N2A8 252 aaKnown RBP9.02□□□□□ -0.97
CCDC39-207ENST00000495817 SEC16BQ96JE7 1060 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 DPH2Q9BQC3 489 aaPredicted RBP9.02□□□□□ -0.97
CCDC39-207ENST00000495817 TNKS2Q9H2K2 1166 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 EHMT1Q9H9B1 1298 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 BRMS1Q9HCU9 246 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 UBP1Q9NZI7 540 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 SNX11Q9Y5W9 270 aa9.02□□□□□ -0.97
CCDC39-207ENST00000495817 ZNF865P0CJ78 1059 aaPredicted RBP9.01□□□□□ -0.97
CCDC39-207ENST00000495817 KIR3DL1P43629 444 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 ZNF165P49910 485 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 CLCN7P51798 805 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 SFRP5Q5T4F7 317 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 XP32Q5T750 250 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 PCDHB14Q9Y5E9 798 aa9.01□□□□□ -0.97
CCDC39-207ENST00000495817 FGRP09769 529 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 COL9A2Q14055 689 aaPredicted RBP9□□□□□ -0.97
CCDC39-207ENST00000495817 SEZ6Q53EL9 994 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 MFSD4AQ8N468 514 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 XAGE3Q8WTP9 111 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 NKD1Q969G9 470 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 EAF1Q96JC9 268 aaPredicted RBP9□□□□□ -0.97
CCDC39-207ENST00000495817 HRASLS5Q96KN8 279 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 GMIPQ9P107 970 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 VAV3Q9UKW4 847 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 SLC5A6Q9Y289 635 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 U3KQE9 123 aa9□□□□□ -0.97
CCDC39-207ENST00000495817 ITIH2P19823 946 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 GP2P55259 537 aaKnown RBP8.99□□□□□ -0.97
CCDC39-207ENST00000495817 PRKCQQ04759 706 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 MCF2L2Q86YR7 1114 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 SPACA3Q8IXA5 215 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 AGBL5Q8NDL9 886 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 DNAJB8Q8NHS0 232 aa8.99□□□□□ -0.97
CCDC39-207ENST00000495817 BCL7CQ8WUZ0 217 aaPredicted RBP8.99□□□□□ -0.97
CCDC39-207ENST00000495817 LRRFIP1Q32MZ4 808 aaKnown RBP8.98□□□□□ -0.97
CCDC39-207ENST00000495817 FLCNQ8NFG4 579 aa8.98□□□□□ -0.97
CCDC39-207ENST00000495817 KLHL3Q9UH77 587 aa8.98□□□□□ -0.97
CCDC39-207ENST00000495817 PLAGL2Q9UPG8 496 aa8.98□□□□□ -0.97
CCDC39-207ENST00000495817 CEP131Q9UPN4 1083 aa8.98□□□□□ -0.97
CCDC39-207ENST00000495817 ADAMTS4O75173 837 aa8.97□□□□□ -0.97
CCDC39-207ENST00000495817 IMPDH2P12268 514 aa8.97□□□□□ -0.97
CCDC39-207ENST00000495817 GTF2F1P35269 517 aaKnown RBP eCLIP8.97□□□□□ -0.97
CCDC39-207ENST00000495817 RBL2Q08999 1139 aa8.97□□□□□ -0.97
CCDC39-207ENST00000495817 CCDC74BQ96LY2 380 aa8.97□□□□□ -0.97
CCDC39-207ENST00000495817 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.97□□□□□ -0.97
CCDC39-207ENST00000495817 CAPN6Q9Y6Q1 641 aa8.97□□□□□ -0.97
CCDC39-207ENST00000495817 MEIS3P2A8K0S8 358 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 UPK3BL1B0FP48 263 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 FAM155AB1AL88 458 aaPredicted RBP8.96□□□□□ -0.98
CCDC39-207ENST00000495817 UPK3BL2E5RIL1 263 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 MCM4P33991 863 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 NKPD1Q17RQ9 610 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 NFXL1Q6ZNB6 911 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 RIN3Q8TB24 985 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 PIWIL2Q8TC59 973 aaKnown RBP8.96□□□□□ -0.98
CCDC39-207ENST00000495817 PPP1R13LQ8WUF5 828 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 ASB11Q8WXH4 323 aa8.96□□□□□ -0.98
CCDC39-207ENST00000495817 DHX38Q92620 1227 aaKnown RBP8.96□□□□□ -0.98
CCDC39-207ENST00000495817 SLC22A31A6NKX4 558 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 DNAJA2O60884 412 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 SOX9P48436 509 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 SOGA3Q5TF21 947 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 GK5Q6ZS86 529 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 CDH24Q86UP0 819 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 PHACTR4Q8IZ21 702 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 RNF141Q8WVD5 230 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 HIRIP3Q9BW71 556 aaPredicted RBP8.95□□□□□ -0.98
CCDC39-207ENST00000495817 PAK6Q9NQU5 681 aaPredicted RBP8.95□□□□□ -0.98
CCDC39-207ENST00000495817 STRIP2Q9ULQ0 834 aa8.95□□□□□ -0.98
CCDC39-207ENST00000495817 CHURC1-FNTBB4DL54 471 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 RAG1P15918 1043 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 CCNFP41002 786 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 CLCQ05315 142 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 AOC3Q16853 763 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 CDCP2Q5VXM1 449 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 OVOS1Q6IE37 1185 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 THAP5Q7Z6K1 395 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 TP53INP2Q8IXH6 220 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 TMEM40Q8WWA1 233 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 ASPNQ9BXN1 380 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 GINM1Q9NU53 330 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 ZNRF3Q9ULT6 936 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 EFR3BQ9Y2G0 817 aa8.94□□□□□ -0.98
CCDC39-207ENST00000495817 RGS13O14921 159 aa8.93□□□□□ -0.98
CCDC39-207ENST00000495817 STK10O94804 968 aaKnown RBP8.93□□□□□ -0.98
CCDC39-207ENST00000495817 NASPP49321 788 aaPredicted RBP8.93□□□□□ -0.98
CCDC39-207ENST00000495817 ANGEL2Q5VTE6 544 aaKnown RBP8.93□□□□□ -0.98
CCDC39-207ENST00000495817 DNAJC2Q99543 621 aaKnown RBP8.93□□□□□ -0.98
CCDC39-207ENST00000495817 OAS3Q9Y6K5 1087 aaKnown RBP8.93□□□□□ -0.98
CCDC39-207ENST00000495817 PITPNM2Q9BZ72 1349 aa8.93□□□□□ -0.98
CCDC39-207ENST00000495817 CNTNAP4Q9C0A0 1308 aa8.92□□□□□ -0.98
CCDC39-207ENST00000495817 PRR33A8MZF0 331 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms