RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TTC5Q8N0Z6 440 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 EHBP1Q8NDI1 1231 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 STRN4Q9NRL3 753 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 PHKG2P15735 406 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 USP8P40818 1118 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 GRIN1Q05586 938 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 SPECC1Q5M775 1068 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 SAMD1Q6SPF0 538 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-230ENST00000495090 THEMISQ8N1K5 641 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-230ENST00000495090 FAM76AQ8TAV0 307 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 CPLX3Q8WVH0 158 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 CNKSR2Q8WXI2 1034 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 XAGE2Q96GT9 111 aa10.94□□□□□ -0.66
SYNE1-230ENST00000495090 ZFP91Q96JP5 570 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-230ENST00000495090 ZNF512BQ96KM6 892 aaPredicted RBP10.94□□□□□ -0.66
SYNE1-230ENST00000495090 BTBD18B2RXH4 712 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 PPP1R3GB7ZBB8 358 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 BMP15O95972 392 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 CD44P16070 742 aaKnown RBP10.93□□□□□ -0.66
SYNE1-230ENST00000495090 ADD2P35612 726 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 GSCP56915 257 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-230ENST00000495090 DPYDQ12882 1025 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 PPFIA1Q13136 1202 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 ALX1Q15699 326 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 NCAPH2Q6IBW4 605 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 POTEHQ6S545 545 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 TRIM22Q8IYM9 498 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 MTA3Q9BTC8 594 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 SLC26A6Q9BXS9 759 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 SEC31BQ9NQW1 1179 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 PKD1L3Q7Z443 1732 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 TIAM2Q8IVF5 1701 aa10.93□□□□□ -0.66
SYNE1-230ENST00000495090 ANO9A1A5B4 782 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 EBAG9O00559 213 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 ERLIN2O94905 339 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 NDUFA10O95299 355 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 CHRM1P11229 460 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 AKAP17AQ02040 695 aaKnown RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 UBE3CQ15386 1083 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 IQCEQ6IPM2 695 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 RPAINQ86UA6 219 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 TEX2Q8IWB9 1127 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 DHX37Q8IY37 1157 aaKnown RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 GRAMD1CQ8IYS0 662 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 ANKRD20A12PQ8NF67 263 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 PAGE5Q96GU1 130 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 CRACR2AQ9BSW2 395 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 CSRNP2Q9H175 543 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 SLC12A7Q9Y666 1083 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 SAR1BQ9Y6B6 198 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 EXOC5O00471 708 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 DEXIO95424 95 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 TFRCP02786 760 aaKnown RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 ZAP70P43403 619 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 MMP14P50281 582 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 KRT31Q15323 416 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 TTF1Q15361 905 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 TMEM67Q5HYA8 995 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 NFXL1Q6ZNB6 911 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 IFNL2Q8IZJ0 200 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 RAPGEF4Q8WZA2 1011 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 FERMT2Q96AC1 680 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 DCAF5Q96JK2 942 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 DRC1Q96MC2 740 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 PYM1Q9BRP8 204 aaKnown RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 RWDD2AQ9UIY3 292 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 PCDHB6Q9Y5E3 794 aa10.92□□□□□ -0.66
SYNE1-230ENST00000495090 EPN1Q9Y6I3 576 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-230ENST00000495090 CCDC196A0A1B0GTZ2 297 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 GOLGA6CA6NDK9 693 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 B4E1Z4 1266 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 GOLGA8KD6RF30 607 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 AGPSO00116 658 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 N4BP3O15049 544 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 ABL1P00519 1130 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 GOLGA6DP0CG33 693 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 RXRAP19793 462 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 GGCXP38435 758 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 IRAK1P51617 712 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 COPB1P53618 953 aaKnown RBP10.91□□□□□ -0.66
SYNE1-230ENST00000495090 ITIH3Q06033 890 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 CCNI2Q6ZMN8 369 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-230ENST00000495090 SPATS2Q86XZ4 545 aaKnown RBP10.91□□□□□ -0.66
SYNE1-230ENST00000495090 AMOTL1Q8IY63 956 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 MICALL1Q8N3F8 863 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 NUP88Q99567 741 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-230ENST00000495090 SELENOOQ9BVL4 669 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 CNNM2Q9H8M5 875 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 SENP2Q9HC62 589 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 GOLGA6AQ9NYA3 693 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 FAM184BQ9ULE4 1060 aa10.91□□□□□ -0.66
SYNE1-230ENST00000495090 REXO2Q9Y3B8 237 aaKnown RBP10.91□□□□□ -0.66
SYNE1-230ENST00000495090 DISP2A7MBM2 1401 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 A0A1W2PQC6 194 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 EIF3HO15372 352 aaKnown RBP eCLIP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 EPB41P11171 864 aaKnown RBP10.9□□□□□ -0.66
SYNE1-230ENST00000495090 ADORA1P30542 326 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 KRT9P35527 623 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 KRT83P78385 493 aa10.9□□□□□ -0.66
SYNE1-230ENST00000495090 SCARF1Q14162 830 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms