RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 PNMA3Q9UL41 463 aa19.01■□□□□ 0.63
LIME1-209ENST00000494776 AKR1B1P15121 316 aa19■□□□□ 0.63
LIME1-209ENST00000494776 OSBPP22059 807 aa19■□□□□ 0.63
LIME1-209ENST00000494776 KIF22Q14807 665 aa19■□□□□ 0.63
LIME1-209ENST00000494776 USP17L2Q6R6M4 530 aa19■□□□□ 0.63
LIME1-209ENST00000494776 CWC27Q6UX04 472 aaKnown RBP19■□□□□ 0.63
LIME1-209ENST00000494776 MCOLN1Q9GZU1 580 aa19■□□□□ 0.63
LIME1-209ENST00000494776 GSPT1P15170 499 aaKnown RBP18.99■□□□□ 0.63
LIME1-209ENST00000494776 GUCY1A2P33402 732 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 USP14P54578 494 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 ARHGEF6Q15052 776 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 VPS53Q5VIR6 699 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 ZNF444Q8N0Y2 327 aaPredicted RBP18.99■□□□□ 0.63
LIME1-209ENST00000494776 CD99L2Q8TCZ2 262 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 CCDC171Q6TFL3 1326 aa18.99■□□□□ 0.63
LIME1-209ENST00000494776 CCDC85CA6NKD9 419 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 PDE4BQ07343 736 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 PPARAQ07869 468 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 ZNF589Q86UQ0 364 aaPredicted RBP18.98■□□□□ 0.63
LIME1-209ENST00000494776 ACER1Q8TDN7 264 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 ARHGEF10LQ9HCE6 1279 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 TRIM17Q9Y577 477 aa18.98■□□□□ 0.63
LIME1-209ENST00000494776 ROBO3Q96MS0 1386 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 IRX3P78415 501 aaPredicted RBP18.97■□□□□ 0.63
LIME1-209ENST00000494776 ATP2B2Q01814 1243 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 ICA1Q05084 483 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 C17orf99Q6UX52 265 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 KIAA1683Q9H0B3 1180 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 EMILIN3Q9NT22 766 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 PTPRFP10586 1907 aa18.97■□□□□ 0.63
LIME1-209ENST00000494776 PRDM1O75626 825 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 ECM2O94769 699 aaPredicted RBP18.96■□□□□ 0.63
LIME1-209ENST00000494776 HSPD1P10809 573 aaKnown RBP18.96■□□□□ 0.63
LIME1-209ENST00000494776 RASA1P20936 1047 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 ALX1Q15699 326 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 PKN2Q16513 984 aaKnown RBP18.96■□□□□ 0.63
LIME1-209ENST00000494776 ASCC2Q9H1I8 757 aaPredicted RBP18.96■□□□□ 0.63
LIME1-209ENST00000494776 SH2D4AQ9H788 454 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 KANSL2Q9H9L4 492 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 EFCC1Q9HA90 598 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 MYH8P13535 1937 aa18.96■□□□□ 0.63
LIME1-209ENST00000494776 FOXP2O15409 715 aa18.95■□□□□ 0.62
LIME1-209ENST00000494776 FGAP02671 866 aa18.95■□□□□ 0.62
LIME1-209ENST00000494776 LACTBP83111 547 aaPredicted RBP18.95■□□□□ 0.62
LIME1-209ENST00000494776 CLEC10AQ8IUN9 316 aa18.95■□□□□ 0.62
LIME1-209ENST00000494776 ADGRA2Q96PE1 1338 aa18.95■□□□□ 0.62
LIME1-209ENST00000494776 HOXA7P31268 230 aaPredicted RBP18.94■□□□□ 0.62
LIME1-209ENST00000494776 CTDSPL2Q05D32 466 aa18.94■□□□□ 0.62
LIME1-209ENST00000494776 OTOP1Q7RTM1 612 aa18.94■□□□□ 0.62
LIME1-209ENST00000494776 RUFY2Q8WXA3 655 aa18.94■□□□□ 0.62
LIME1-209ENST00000494776 C12orf42Q96LP6 360 aa18.94■□□□□ 0.62
LIME1-209ENST00000494776 LOC285556D6RIA3 1793 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 A0A1W2PRG0 241 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L15C9J2P7 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L13C9JLJ4 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L11C9JVI0 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L18D6R9N7 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L22D6RA61 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L17D6RBQ6 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L19D6RCP7 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L20D6RJB6 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 RAD21O60216 631 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 TSPY3P0CV98 308 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 TSPY8P0CW00 308 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 EEF2P13639 858 aaKnown RBP18.93■□□□□ 0.62
LIME1-209ENST00000494776 GCLCP48506 637 aaPredicted RBP18.93■□□□□ 0.62
LIME1-209ENST00000494776 USP17L24Q0WX57 530 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 ANKRD13CQ8N6S4 541 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 TOMM22Q9NS69 142 aa18.93■□□□□ 0.62
LIME1-209ENST00000494776 FMNL1O95466 1100 aaPredicted RBP18.92■□□□□ 0.62
LIME1-209ENST00000494776 BCRP11274 1271 aa18.92■□□□□ 0.62
LIME1-209ENST00000494776 VCAM1P19320 739 aa18.92■□□□□ 0.62
LIME1-209ENST00000494776 PSMC4P43686 418 aa18.92■□□□□ 0.62
LIME1-209ENST00000494776 FBXO46Q6PJ61 603 aaPredicted RBP18.92■□□□□ 0.62
LIME1-209ENST00000494776 P2RX7Q99572 595 aaKnown RBP18.92■□□□□ 0.62
LIME1-209ENST00000494776 ANAPC4Q9UJX5 808 aa18.92■□□□□ 0.62
LIME1-209ENST00000494776 TMX2Q9Y320 296 aa18.92■□□□□ 0.62
LIME1-209ENST00000494776 TFAP4Q01664 338 aa18.91■□□□□ 0.62
LIME1-209ENST00000494776 FAM47AQ5JRC9 791 aa18.91■□□□□ 0.62
LIME1-209ENST00000494776 ARHGAP39Q9C0H5 1083 aa18.91■□□□□ 0.62
LIME1-209ENST00000494776 RPAP3Q9H6T3 665 aaPredicted RBP18.91■□□□□ 0.62
LIME1-209ENST00000494776 GOPCQ9HD26 462 aa18.91■□□□□ 0.62
LIME1-209ENST00000494776 ZMYM6O95789 1325 aa18.91■□□□□ 0.62
LIME1-209ENST00000494776 TSPY2A6NKD2 308 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 RANBP6O60518 1105 aaKnown RBP18.9■□□□□ 0.62
LIME1-209ENST00000494776 GNRH1P01148 92 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 CHMLP26374 656 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 HOXD10P28358 340 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 FCGRTP55899 365 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 HAND2P61296 217 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 HERVK_113P62684 666 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 FAM110CQ1W6H9 321 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 RRP12Q5JTH9 1297 aaKnown RBP18.9■□□□□ 0.62
LIME1-209ENST00000494776 CATSPERGQ6ZRH7 1159 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 SKAP1Q86WV1 359 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 SIAH1Q8IUQ4 282 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 SPICE1Q8N0Z3 855 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 LPAR1Q92633 364 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.9■□□□□ 0.62
LIME1-209ENST00000494776 TANGO6Q9C0B7 1094 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms