RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 USP17L22D6RA61 530 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 USP17L17D6RBQ6 530 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 USP17L19D6RCP7 530 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 USP17L20D6RJB6 530 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 GH2P01242 217 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 ATP2B2Q01814 1243 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 USP17L24Q0WX57 530 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 ADGRA1Q86SQ6 560 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 LPAR1Q92633 364 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 IVNS1ABPQ9Y6Y0 642 aa16.81■□□□□ 0.28
GPNMB-213ENST00000492512 LTBP2Q14767 1821 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 DNM1LO00429 736 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 CNMDO75829 334 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 PTPREP23469 700 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 CCDC158Q5M9N0 1113 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 TRMT2AQ8IZ69 625 aaKnown RBP16.8■□□□□ 0.28
GPNMB-213ENST00000492512 C12orf42Q96LP6 360 aa16.8■□□□□ 0.28
GPNMB-213ENST00000492512 GNAI2P04899 355 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 CYP2E1P05181 493 aaPredicted RBP16.79■□□□□ 0.28
GPNMB-213ENST00000492512 CYP2C19P33261 490 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 USP14P54578 494 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 RTP1P59025 263 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 CATSPERGQ6ZRH7 1159 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 ARHGAP45Q92619 1136 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 ATP11BQ9Y2G3 1177 aa16.79■□□□□ 0.28
GPNMB-213ENST00000492512 RLFQ13129 1914 aa16.78■□□□□ 0.28
GPNMB-213ENST00000492512 PNMA6EA0A0J9YXQ4 647 aa16.78■□□□□ 0.28
GPNMB-213ENST00000492512 ZNF316A6NFI3 1004 aaPredicted RBP16.78■□□□□ 0.28
GPNMB-213ENST00000492512 HOXC6P09630 235 aa16.78■□□□□ 0.28
GPNMB-213ENST00000492512 DYNLL1P63167 89 aaKnown RBP16.78■□□□□ 0.28
GPNMB-213ENST00000492512 GRB14Q14449 540 aa16.78■□□□□ 0.28
GPNMB-213ENST00000492512 RAB3GAP1Q15042 981 aa16.78■□□□□ 0.28
GPNMB-213ENST00000492512 VCAM1P19320 739 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 RARSP54136 660 aaKnown RBP16.77■□□□□ 0.28
GPNMB-213ENST00000492512 LBX2Q6XYB7 198 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 ARRDC4Q8NCT1 418 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 NPLOC4Q8TAT6 608 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 CDX2Q99626 313 aaPredicted RBP16.77■□□□□ 0.28
GPNMB-213ENST00000492512 DBNDD2Q9BQY9 259 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 KIAA1683Q9H0B3 1180 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 BTBD7Q9P203 1132 aa16.77■□□□□ 0.28
GPNMB-213ENST00000492512 TTC28Q96AY4 2481 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 KBTBD13C9JR72 458 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 IGSF3O75054 1194 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 CYP7A1P22680 504 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 USP5P45974 858 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 OS9Q13438 667 aaPredicted RBP16.76■□□□□ 0.27
GPNMB-213ENST00000492512 SHHQ15465 462 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 TNNI3KQ59H18 835 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 GJC2Q5T442 439 aaPredicted RBP16.76■□□□□ 0.27
GPNMB-213ENST00000492512 TATDN1Q6P1N9 297 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 TRPV1Q8NER1 839 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 MAFAQ8NHW3 353 aaPredicted RBP16.76■□□□□ 0.27
GPNMB-213ENST00000492512 GPR108Q9NPR9 543 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 PRDM5Q9NQX1 630 aaPredicted RBP16.76■□□□□ 0.27
GPNMB-213ENST00000492512 SERPINB13Q9UIV8 391 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 FPGT-TNNI3KV9GXZ4 949 aa16.76■□□□□ 0.27
GPNMB-213ENST00000492512 CYBAP13498 195 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 ZAP70P43403 619 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 ABCB5Q2M3G0 1257 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 CERKLQ49MI3 558 aaPredicted RBP16.75■□□□□ 0.27
GPNMB-213ENST00000492512 DPP9Q86TI2 863 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 CERS3Q8IU89 383 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 ACER1Q8TDN7 264 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 EHD4Q9H223 541 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 SEMA6BQ9H3T3 888 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 RPAP3Q9H6T3 665 aaPredicted RBP16.75■□□□□ 0.27
GPNMB-213ENST00000492512 CABP5Q9NP86 173 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 PIH1D3Q9NQM4 214 aaKnown RBP16.75■□□□□ 0.27
GPNMB-213ENST00000492512 CDH23Q9H251 3354 aa16.75■□□□□ 0.27
GPNMB-213ENST00000492512 SPDYE16A6NNV3 312 aaPredicted RBP16.74■□□□□ 0.27
GPNMB-213ENST00000492512 MYCNP04198 464 aaPredicted RBP16.74■□□□□ 0.27
GPNMB-213ENST00000492512 C9orf50Q5SZB4 431 aa16.74■□□□□ 0.27
GPNMB-213ENST00000492512 SLC39A5Q6ZMH5 540 aa16.74■□□□□ 0.27
GPNMB-213ENST00000492512 MIGA1Q8NAN2 632 aa16.74■□□□□ 0.27
GPNMB-213ENST00000492512 ZNF512BQ96KM6 892 aaPredicted RBP16.74■□□□□ 0.27
GPNMB-213ENST00000492512 SPTBN5Q9NRC6 3674 aaKnown RBP16.74■□□□□ 0.27
GPNMB-213ENST00000492512 ZNF236Q9UL36 1845 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 IPO8O15397 1037 aaKnown RBP16.73■□□□□ 0.27
GPNMB-213ENST00000492512 IDH1O75874 414 aaKnown RBP16.73■□□□□ 0.27
GPNMB-213ENST00000492512 ADORA2AP29274 412 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 ANO1Q5XXA6 986 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 OLFML2BQ68BL8 750 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 TTC6Q86TZ1 520 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 BADQ92934 168 aa16.73■□□□□ 0.27
GPNMB-213ENST00000492512 SEPT4O43236 478 aa16.72■□□□□ 0.27
GPNMB-213ENST00000492512 STRNO43815 780 aa16.72■□□□□ 0.27
GPNMB-213ENST00000492512 IGHA2P01877 340 aa16.72■□□□□ 0.27
GPNMB-213ENST00000492512 SMAD3P84022 425 aaKnown RBP16.72■□□□□ 0.27
GPNMB-213ENST00000492512 TRIM60Q495X7 471 aa16.72■□□□□ 0.27
GPNMB-213ENST00000492512 MYLIPQ8WY64 445 aa16.72■□□□□ 0.27
GPNMB-213ENST00000492512 MOV10L1Q9BXT6 1211 aaKnown RBP16.72■□□□□ 0.27
GPNMB-213ENST00000492512 SMCHD1A6NHR9 2005 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 TRIM27P14373 513 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 ADCYAP1R1P41586 468 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 MAGEB6Q8N7X4 407 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 PDLIM7Q9NR12 457 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 SLC5A4Q9NY91 659 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 HOXC10Q9NYD6 342 aa16.71■□□□□ 0.27
GPNMB-213ENST00000492512 ZNFX1Q9P2E3 1918 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms