RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 CCER2I3L3R5 266 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 DNM1LO00429 736 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 IGSF3O75054 1194 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 USP17L2Q6R6M4 530 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 ARRDC4Q8NCT1 418 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 SSH1Q8WYL5 1049 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 PAGR1Q9BTK6 254 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 RAI14Q9P0K7 980 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 DDX20Q9UHI6 824 aaKnown RBP13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 IVNS1ABPQ9Y6Y0 642 aa13.72□□□□□ -0.21
CLCNKA-206ENST00000491433 PKD1L2Q7Z442 2459 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 SLC15A5A6NIM6 579 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 ANP32CO43423 234 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 ATP2B2Q01814 1243 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 CCL14Q16627 93 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 Q3C1V9 767 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 SPATA5Q8NB90 893 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 TIFAQ96CG3 184 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 PORCNQ9H237 461 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 LRP2BPQ9P2M1 347 aa13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 PA2G4Q9UQ80 394 aaKnown RBP13.71□□□□□ -0.21
CLCNKA-206ENST00000491433 LTBP2Q14767 1821 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 E9PSI1 815 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 HLA-DOAP06340 250 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 UQCRFS1P1P0C7P4 283 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 CNGA1P29973 690 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 USP14P54578 494 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 RTP1P59025 263 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 RRP1BQ14684 758 aaKnown RBP13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 METTL16Q86W50 562 aaKnown RBP13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 FBXL18Q96ME1 805 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 NEUROD6Q96NK8 337 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 UIMC1Q96RL1 719 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 PRDM12Q9H4Q4 367 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 HMG20BQ9P0W2 317 aa13.7□□□□□ -0.22
CLCNKA-206ENST00000491433 TCF20Q9UGU0 1960 aaKnown RBP13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L15C9J2P7 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L13C9JLJ4 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 KBTBD13C9JR72 458 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L11C9JVI0 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L18D6R9N7 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L22D6RA61 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L17D6RBQ6 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L19D6RCP7 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L20D6RJB6 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 PI4K2BG5E9Z4 385 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 HOXC6P09630 235 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 IGFBP4P22692 258 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 PTPREP23469 700 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 ARID4AP29374 1257 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 KCNQ1P51787 676 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 ATN1P54259 1190 aaPredicted RBP13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 USP17L24Q0WX57 530 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 WDR78Q5VTH9 848 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 ZNF384Q8TF68 577 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 C12orf42Q96LP6 360 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 SMC4Q9NTJ3 1288 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 ZBTB21Q9ULJ3 1066 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 CACNA1BQ00975 2339 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 FOCADQ5VW36 1801 aa13.69□□□□□ -0.22
CLCNKA-206ENST00000491433 RLFQ13129 1914 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 ZNF521Q96K83 1311 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 PPP4CP60510 307 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 TFF2Q03403 129 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 TFCP2Q12800 502 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 LBX2Q6XYB7 198 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 SH3RF3Q8TEJ3 882 aaPredicted RBP13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 BADQ92934 168 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 API5Q9BZZ5 524 aaKnown RBP13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 ATP11BQ9Y2G3 1177 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 SIPA1L1O43166 1804 aa13.68□□□□□ -0.22
CLCNKA-206ENST00000491433 GNAI3P08754 354 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 NAA16Q6N069 864 aaPredicted RBP13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 SLC39A5Q6ZMH5 540 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 CERS3Q8IU89 383 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 FAM9BQ8IZU0 186 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 FEZ1Q99689 392 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 PRDM5Q9NQX1 630 aaPredicted RBP13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 EMILIN3Q9NT22 766 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 AATFQ9NY61 560 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 SLC5A4Q9NY91 659 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 XIRP2A4UGR9 3374 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 CDK5RAP2Q96SN8 1893 aa13.67□□□□□ -0.22
CLCNKA-206ENST00000491433 FLT1P17948 1338 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 DNAH12Q6ZR08 3092 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 CFAP54Q96N23 3096 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 SRGAP3O43295 1099 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 STRNO43815 780 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 PEX10O60683 326 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 GDF11O95390 407 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 GRB14Q14449 540 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 TBC1D9Q6ZT07 1266 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 MAPKAPK5Q8IW41 473 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 TGFBRAP1Q8WUH2 860 aa13.66□□□□□ -0.22
CLCNKA-206ENST00000491433 CT47B1P0C2W7 299 aaPredicted RBP13.65□□□□□ -0.22
CLCNKA-206ENST00000491433 MTX1Q13505 466 aa13.65□□□□□ -0.22
CLCNKA-206ENST00000491433 CSPP1Q1MSJ5 1256 aa13.65□□□□□ -0.22
CLCNKA-206ENST00000491433 C1orf53Q5VUE5 145 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms