RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 RBPJLQ9UBG7 517 aa16.51■□□□□ 0.23
COL6A3-211ENST00000491233 A0A0G2JMZ2 1700 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 FRMPD3Q5JV73 1810 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 CYP2D6P10635 497 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 ATP5JP18859 108 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 CYP2B6P20813 491 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 ADD2P35612 726 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 USP14P54578 494 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 TRIM32Q13049 653 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 PDE3AQ14432 1141 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 SLFNL1Q499Z3 407 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 SOCS4Q8WXH5 440 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 TRIB2Q92519 343 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 KIAA1683Q9H0B3 1180 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 PORCNQ9H237 461 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 ARMT1Q9H993 441 aa16.5■□□□□ 0.23
COL6A3-211ENST00000491233 DCP1AQ9NPI6 582 aaPredicted RBP16.5■□□□□ 0.23
COL6A3-211ENST00000491233 COLQQ9Y215 455 aaPredicted RBP16.5■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L15C9J2P7 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L13C9JLJ4 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L11C9JVI0 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L18D6R9N7 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L22D6RA61 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L17D6RBQ6 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L19D6RCP7 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L20D6RJB6 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 MBD4O95243 580 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 TFRCP02786 760 aaKnown RBP16.49■□□□□ 0.23
COL6A3-211ENST00000491233 VCAM1P19320 739 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 MAPK4P31152 587 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 GUCY1A2P33402 732 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 USP17L24Q0WX57 530 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 SEPT2Q15019 361 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 POTEEQ6S8J3 1075 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 HAUS7Q99871 368 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 NUDT12Q9BQG2 462 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 LRRCC1Q9C099 1032 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 CRISPLD2Q9H0B8 497 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 PARP14Q460N5 1801 aa16.49■□□□□ 0.23
COL6A3-211ENST00000491233 MPHOSPH10O00566 681 aaKnown RBP16.48■□□□□ 0.23
COL6A3-211ENST00000491233 SMARCA5O60264 1052 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-211ENST00000491233 Q3C1V9 767 aa16.48■□□□□ 0.23
COL6A3-211ENST00000491233 CCAR1Q8IX12 1150 aaKnown RBP16.48■□□□□ 0.23
COL6A3-211ENST00000491233 SLC44A5Q8NCS7 719 aa16.48■□□□□ 0.23
COL6A3-211ENST00000491233 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.48■□□□□ 0.23
COL6A3-211ENST00000491233 HMX1Q9NP08 348 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-211ENST00000491233 RLFQ13129 1914 aa16.48■□□□□ 0.23
COL6A3-211ENST00000491233 RPTORQ8N122 1335 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 PRKAB2O43741 272 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CNMDO75829 334 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CHGBP05060 677 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CAPN2P17655 700 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CATSPERGQ6ZRH7 1159 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 GPR142Q7Z601 462 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CWC22Q9HCG8 908 aaKnown RBP16.47■□□□□ 0.23
COL6A3-211ENST00000491233 CEP290O15078 2479 aa16.47■□□□□ 0.23
COL6A3-211ENST00000491233 XRCC5P13010 732 aaKnown RBP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 PRKAR2AP13861 404 aaKnown RBP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 ZKSCAN1P17029 563 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 FXR1P51114 621 aaKnown RBP eCLIP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 CHRDL2Q6WN34 429 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 PLEKHH3Q7Z736 793 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 DIS3LQ8TF46 1054 aaKnown RBP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 DYNLL2Q96FJ2 89 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 RPAP3Q9H6T3 665 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-211ENST00000491233 PCDH10Q9P2E7 1040 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 SWAP70Q9UH65 585 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 RABGAP1Q9Y3P9 1069 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 ZNF236Q9UL36 1845 aa16.46■□□□□ 0.23
COL6A3-211ENST00000491233 A0A1W2PRG0 241 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 SPDYE16A6NNV3 312 aaPredicted RBP16.45■□□□□ 0.22
COL6A3-211ENST00000491233 RGS2P41220 211 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 CCNA1P78396 465 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 UBE3CQ15386 1083 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 MORN1Q5T089 497 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 MAP3K21Q5TCX8 1036 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 TMEM179Q6ZVK1 233 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 CLEC10AQ8IUN9 316 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 USP6NLQ92738 828 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 PAWRQ96IZ0 340 aaKnown RBP16.45■□□□□ 0.22
COL6A3-211ENST00000491233 APBA2Q99767 749 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 ATP8A2Q9NTI2 1148 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 NR2E3Q9Y5X4 410 aa16.45■□□□□ 0.22
COL6A3-211ENST00000491233 CYP2D7A0A087X1C5 515 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 SMIM22K7EJ46 135 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 AKR1B1P15121 316 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 CCL14Q16627 93 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 WDR78Q5VTH9 848 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 LBX2Q6XYB7 198 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 NECAB2Q7Z6G3 386 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 TRMT44Q8IYL2 757 aaKnown RBP16.44■□□□□ 0.22
COL6A3-211ENST00000491233 ANKLE1Q8NAG6 615 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 BTBD7Q9P203 1132 aa16.44■□□□□ 0.22
COL6A3-211ENST00000491233 GREB1LQ9C091 1923 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-211ENST00000491233 COL11A1P12107 1806 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-211ENST00000491233 MAP2K5Q13163 448 aa16.43■□□□□ 0.22
COL6A3-211ENST00000491233 ZSCAN25Q6NSZ9 544 aa16.43■□□□□ 0.22
COL6A3-211ENST00000491233 AMOTL1Q8IY63 956 aa16.43■□□□□ 0.22
COL6A3-211ENST00000491233 TANGO6Q9C0B7 1094 aa16.43■□□□□ 0.22
COL6A3-211ENST00000491233 ECHDC1Q9NTX5 307 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms