RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GPHNQ9NQX3 736 aaPredicted RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 HERC5Q9UII4 1024 aaKnown RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 KIF3AQ9Y496 699 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 TRPM7Q96QT4 1865 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 GOLGA6L22H0YM25 854 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 TBC1D12O60347 775 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 MAP3K10Q02779 954 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 SMC1BQ8NDV3 1235 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 NKX2-3Q8TAU0 364 aa18.59■□□□□ 0.57
SYNE1-227ENST00000489156 BAG4O95429 457 aaKnown RBP18.58■□□□□ 0.57
SYNE1-227ENST00000489156 SHMT1P34896 483 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 RCAN1P53805 252 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 LARP1BQ659C4 914 aaKnown RBP18.58■□□□□ 0.57
SYNE1-227ENST00000489156 HOOK2Q96ED9 719 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 UBAC1Q9BSL1 405 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 MKNK2Q9HBH9 465 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 NAP1L2Q9ULW6 460 aaPredicted RBP18.58■□□□□ 0.57
SYNE1-227ENST00000489156 HPS5Q9UPZ3 1129 aa18.58■□□□□ 0.57
SYNE1-227ENST00000489156 ZSCAN22P10073 491 aaPredicted RBP18.58■□□□□ 0.56
SYNE1-227ENST00000489156 NF2P35240 595 aa18.58■□□□□ 0.56
SYNE1-227ENST00000489156 DCAF15Q66K64 600 aa18.58■□□□□ 0.56
SYNE1-227ENST00000489156 APOA5Q6Q788 366 aa18.58■□□□□ 0.56
SYNE1-227ENST00000489156 IQCA1Q86XH1 822 aa18.58■□□□□ 0.56
SYNE1-227ENST00000489156 NSUN7Q8NE18 718 aaKnown RBP18.58■□□□□ 0.56
SYNE1-227ENST00000489156 RBM46Q8TBY0 533 aaKnown RBP18.58■□□□□ 0.56
SYNE1-227ENST00000489156 SWAP70Q9UH65 585 aa18.58■□□□□ 0.56
SYNE1-227ENST00000489156 GOLGA8BA8MQT2 603 aa18.57■□□□□ 0.56
SYNE1-227ENST00000489156 CCT2P78371 535 aaKnown RBP18.57■□□□□ 0.56
SYNE1-227ENST00000489156 ZNF287Q9HBT7 754 aa18.57■□□□□ 0.56
SYNE1-227ENST00000489156 ATP6V1DQ9Y5K8 247 aa18.57■□□□□ 0.56
SYNE1-227ENST00000489156 CCDC69A6NI79 296 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 USP2O75604 605 aaPredicted RBP18.56■□□□□ 0.56
SYNE1-227ENST00000489156 RRP1BQ14684 758 aaKnown RBP18.56■□□□□ 0.56
SYNE1-227ENST00000489156 WTAPQ15007 396 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 TATDN1Q6P1N9 297 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 SYNE3Q6ZMZ3 975 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 NFXL1Q6ZNB6 911 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 ZNF341Q9BYN7 854 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 SLC12A7Q9Y666 1083 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 PHF20L1A8MW92 1017 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 PPP1R12BO60237 982 aaPredicted RBP18.56■□□□□ 0.56
SYNE1-227ENST00000489156 RANBP6O60518 1105 aaKnown RBP18.56■□□□□ 0.56
SYNE1-227ENST00000489156 CTDNEP1O95476 244 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 RASA1P20936 1047 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 MOB2Q70IA6 237 aa18.56■□□□□ 0.56
SYNE1-227ENST00000489156 ATAD5Q96QE3 1844 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 ZBTB43O43298 467 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 CELF2O95319 508 aaKnown RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 TTLL12Q14166 644 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 SEC23AQ15436 765 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 CERKLQ49MI3 558 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 ZNF444Q8N0Y2 327 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 FAM184AQ8NB25 1140 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 KLRG1Q96E93 195 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 ZSCAN10Q96SZ4 725 aaPredicted RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 NCOA5Q9HCD5 579 aaKnown RBP18.55■□□□□ 0.56
SYNE1-227ENST00000489156 MTMR6Q9Y217 621 aa18.55■□□□□ 0.56
SYNE1-227ENST00000489156 NID2Q14112 1375 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 PTPDC1A2A3K4 754 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 CPLX1O14810 134 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 JAK2O60674 1132 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 GDF11O95390 407 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 METAP2P50579 478 aaKnown RBP eCLIP18.54■□□□□ 0.56
SYNE1-227ENST00000489156 PPP2R5BQ15173 497 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 SHROOM1Q2M3G4 852 aaPredicted RBP18.54■□□□□ 0.56
SYNE1-227ENST00000489156 FAM47AQ5JRC9 791 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 CST9Q5W186 159 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 WRNIP1Q96S55 665 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 TNKSO95271 1327 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 PASKQ96RG2 1323 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 CDKL5O76039 1030 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 F13A1P00488 732 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 INPP5BP32019 993 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 CPLX2Q6PUV4 134 aaKnown RBP18.54■□□□□ 0.56
SYNE1-227ENST00000489156 RGS22Q8NE09 1264 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 TAOK2Q9UL54 1235 aa18.54■□□□□ 0.56
SYNE1-227ENST00000489156 OTOFQ9HC10 1997 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 AKR1B1P15121 316 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 JAG1P78504 1218 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 CCDC178Q5BJE1 867 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 ZKSCAN4Q969J2 545 aaPredicted RBP18.53■□□□□ 0.56
SYNE1-227ENST00000489156 ZKSCAN3Q9BRR0 538 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 SENP2Q9HC62 589 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 ZNF112Q9UJU3 913 aa18.53■□□□□ 0.56
SYNE1-227ENST00000489156 TSPY2A6NKD2 308 aa18.52■□□□□ 0.56
SYNE1-227ENST00000489156 MPHOSPH10O00566 681 aaKnown RBP18.52■□□□□ 0.56
SYNE1-227ENST00000489156 CAP2P40123 477 aa18.52■□□□□ 0.56
SYNE1-227ENST00000489156 TFAP4Q01664 338 aa18.52■□□□□ 0.56
SYNE1-227ENST00000489156 ENAHQ8N8S7 591 aaPredicted RBP18.52■□□□□ 0.56
SYNE1-227ENST00000489156 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.52■□□□□ 0.56
SYNE1-227ENST00000489156 GBA2Q9HCG7 927 aaPredicted RBP18.52■□□□□ 0.56
SYNE1-227ENST00000489156 CCDC196A0A1B0GTZ2 297 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 TSPY3P0CV98 308 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 TSPY8P0CW00 308 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 IREB2P48200 963 aaKnown RBP18.52■□□□□ 0.55
SYNE1-227ENST00000489156 FSTL1Q12841 308 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 ABCB5Q2M3G0 1257 aa18.52■□□□□ 0.55
SYNE1-227ENST00000489156 FOXD4L5Q5VV16 416 aaPredicted RBP18.52■□□□□ 0.55
SYNE1-227ENST00000489156 ARMC9Q7Z3E5 817 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms