RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CAVIN4Q5BKX8 364 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 SMIM5Q71RC9 77 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 BAG1Q99933 345 aaPredicted RBP20.5■□□□□ 0.87
VIM-206ENST00000487938 MORC2Q9Y6X9 1032 aaPredicted RBP20.5■□□□□ 0.87
VIM-206ENST00000487938 MYH6P13533 1939 aa20.49■□□□□ 0.87
VIM-206ENST00000487938 PRPF3O43395 683 aaKnown RBP20.49■□□□□ 0.87
VIM-206ENST00000487938 KCNQ4P56696 695 aa20.49■□□□□ 0.87
VIM-206ENST00000487938 CTR9Q6PD62 1173 aa20.49■□□□□ 0.87
VIM-206ENST00000487938 FAM84BQ96KN1 310 aaPredicted RBP20.49■□□□□ 0.87
VIM-206ENST00000487938 ZHX1Q9UKY1 873 aaPredicted RBP20.49■□□□□ 0.87
VIM-206ENST00000487938 MINPP1Q9UNW1 487 aa20.49■□□□□ 0.87
VIM-206ENST00000487938 USP17L12C9JPN9 530 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 USP17L21D6R901 530 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 KCNQ2O43526 872 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 NMT2O60551 498 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 TUBB4AP04350 444 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 STX17P56962 302 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 SPECC1LQ69YQ0 1117 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 KLHL10Q6JEL2 608 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 AATFQ9NY61 560 aaKnown RBP eCLIP20.48■□□□□ 0.87
VIM-206ENST00000487938 PPP2R2CQ9Y2T4 447 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 BAZ2AQ9UIF9 1905 aaKnown RBP20.48■□□□□ 0.87
VIM-206ENST00000487938 ARHGAP6O43182 974 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 URI1O94763 535 aaPredicted RBP20.48■□□□□ 0.87
VIM-206ENST00000487938 UBE4AQ14139 1066 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 PPP2R5BQ15173 497 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 IQCA1Q86XH1 822 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 TC2NQ8N9U0 490 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 TRIML1Q8N9V2 468 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 SPATA20Q8TB22 786 aa20.48■□□□□ 0.87
VIM-206ENST00000487938 SYMPKQ92797 1274 aaKnown RBP20.48■□□□□ 0.87
VIM-206ENST00000487938 CELF1Q92879 486 aaKnown RBP20.48■□□□□ 0.87
VIM-206ENST00000487938 CICQ96RK0 1608 aaPredicted RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 VWA3AA6NCI4 1184 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 KLRK1P26718 216 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 PLCD1P51178 756 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 TROAPQ12815 778 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 NUTM2AQ8IVF1 878 aaPredicted RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 BSDC1Q9NW68 430 aaPredicted RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 ZNF652Q9Y2D9 606 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 PHLPP2Q6ZVD8 1323 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 NUTM2BA6NNL0 878 aaPredicted RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 NUTM2EB1AL46 878 aaPredicted RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 ZSCAN12O43309 604 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 CD44P16070 742 aaKnown RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 FAM47AQ5JRC9 791 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 UTP14CQ5TAP6 766 aaKnown RBP20.47■□□□□ 0.87
VIM-206ENST00000487938 TOGARAM2Q6ZUX3 1019 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 STAMQ92783 540 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 PAGE5Q96GU1 130 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 BRIP1Q9BX63 1249 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 SPATA31A5Q5VU36 1347 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 SPATA31A7Q8IWB4 1347 aa20.47■□□□□ 0.87
VIM-206ENST00000487938 NR1I3Q14994 352 aa20.46■□□□□ 0.87
VIM-206ENST00000487938 SMYD4Q8IYR2 804 aaPredicted RBP20.46■□□□□ 0.87
VIM-206ENST00000487938 GTPBP4Q9BZE4 634 aaKnown RBP20.46■□□□□ 0.87
VIM-206ENST00000487938 NRAPQ86VF7 1730 aa20.46■□□□□ 0.87
VIM-206ENST00000487938 TEX33O43247 280 aa20.46■□□□□ 0.87
VIM-206ENST00000487938 GTF2E1P29083 439 aaPredicted RBP20.46■□□□□ 0.87
VIM-206ENST00000487938 RBM28Q9NW13 759 aaKnown RBP20.46■□□□□ 0.87
VIM-206ENST00000487938 SLFN14P0C7P3 912 aa20.45■□□□□ 0.86
VIM-206ENST00000487938 FCHSD1Q86WN1 690 aa20.45■□□□□ 0.86
VIM-206ENST00000487938 SRBD1Q8N5C6 995 aaKnown RBP20.45■□□□□ 0.86
VIM-206ENST00000487938 ZNF446Q9NWS9 450 aa20.45■□□□□ 0.86
VIM-206ENST00000487938 COBLO75128 1261 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 SF3B3Q15393 1217 aaKnown RBP20.44■□□□□ 0.86
VIM-206ENST00000487938 SLC4A8Q2Y0W8 1093 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 ARHGAP29Q52LW3 1261 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 TFCP2L1Q9NZI6 479 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 CACNA1SQ13698 1873 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 BAZ2BQ9UIF8 2168 aaKnown RBP20.44■□□□□ 0.86
VIM-206ENST00000487938 STX10O60499 249 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 VEGFAP15692 232 aaPredicted RBP20.44■□□□□ 0.86
VIM-206ENST00000487938 ERCC5P28715 1186 aaPredicted RBP20.44■□□□□ 0.86
VIM-206ENST00000487938 MECOMQ03112 1051 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 NPY5RQ15761 445 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 TMTC3Q6ZXV5 915 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 NSUN4Q96CB9 384 aaKnown RBP20.44■□□□□ 0.86
VIM-206ENST00000487938 DESI2Q9BSY9 194 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 JAG2Q9Y219 1238 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 LTBP4Q8N2S1 1624 aa20.44■□□□□ 0.86
VIM-206ENST00000487938 ADAMTS3O15072 1205 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CYP2D6P10635 497 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 PTGDRQ13258 359 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 TTC38Q5R3I4 469 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 SH3RF1Q7Z6J0 888 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CPLX3Q8WVH0 158 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CARD6Q9BX69 1037 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 BRMS1Q9HCU9 246 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 DUOX1Q9NRD9 1551 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 FGRP09769 529 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CALM1P0DP23 149 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CALM2P0DP24 149 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CALM3P0DP25 149 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 GNG11P61952 73 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 BARGINQ6ZT62 677 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 CCDC24Q8N4L8 307 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 TNFRSF25Q93038 417 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 WDR24Q96S15 920 aa20.43■□□□□ 0.86
VIM-206ENST00000487938 NOL10Q9BSC4 688 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms