RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SH3TC1Q8TE82 1336 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 NRKQ7Z2Y5 1582 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 KCNQ3O43525 872 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 ATP1A1P05023 1023 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 RPSAP08865 295 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 VAV2P52735 878 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 UBXN1Q04323 297 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 ODF2Q5BJF6 829 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 ANKLE2Q86XL3 938 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 TRIM22Q8IYM9 498 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 PHKBQ93100 1093 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 HAUS7Q99871 368 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 HPSEQ9Y251 543 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF213O14771 459 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 SHOX2O60902 331 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 PAX7P23759 505 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 HPDP32754 393 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 FXR1P51114 621 aaKnown RBP eCLIP7□□□□□ -1.298e-7■■■■□ 20.2
VPS13D-209ENST00000487188 HDGFP51858 240 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 PPARDQ03181 441 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 SPA17Q15506 151 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 RRAGBQ5VZM2 374 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 AP1ARQ63HQ0 302 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 NAIF1Q69YI7 327 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 ABHD10Q9NUJ1 306 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 LUC7L2Q9Y383 392 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 RNF113AO15541 343 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 FSBPO95073 299 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF18P17022 549 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 PEX19P40855 299 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 IRX1P78414 480 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 SSRP1Q08945 709 aaKnown RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 NNTQ13423 1086 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 MPRIPQ6WCQ1 1025 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 CCNI2Q6ZMN8 369 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 WASF1Q92558 559 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 POLD4Q9HCU8 107 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 TRIM10Q9UDY6 481 aa7□□□□□ -1.29
VPS13D-209ENST00000487188 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7□□□□□ -1.29
VPS13D-209ENST00000487188 NEDD4P46934 1319 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ABCC6O95255 1503 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 CACNA1FO60840 1977 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 RFX7Q2KHR2 1363 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 BUB1BO60566 1050 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 USO1O60763 962 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 TACC1O75410 805 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 NDUFA10O95299 355 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 SLC8A1P32418 973 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 EPHB4P54760 987 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 KIF5AQ12840 1032 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC96Q2M329 555 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 C8orf74Q6P047 294 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 SH2D3CQ8N5H7 860 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ARFGAP2Q8N6H7 521 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 PPANQ9NQ55 473 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 KCNG1Q9UIX4 513 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 RIPOR2Q9Y4F9 1068 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ZMYM6O95789 1325 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ANKRD18BA2A2Z9 1011 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 KIF3CO14782 793 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ZBTB43O43298 467 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 COBLO75128 1261 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 MRPS25P82663 173 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 MORC3Q14149 939 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ZKSCAN8Q15776 578 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 PREPLQ4J6C6 727 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 TRAPPC11Q7Z392 1133 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 IFT81Q8WYA0 676 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ACTR5Q9H9F9 607 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 SLC40A1Q9NP59 571 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 A1CFQ9NQ94 594 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 SPATS2LQ9NUQ6 558 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 MCM8Q9UJA3 840 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 PRR36Q9H6K5 1346 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 JCADQ9P266 1359 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 A0A0G2JLW4 131 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 GYPCP04921 128 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 CDC25AP30304 524 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 DNA2P51530 1060 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 CRYMQ14894 314 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 PROSER3Q2NL68 480 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 UBE3BQ7Z3V4 1068 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 FOXP4Q8IVH2 680 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 PARP9Q8IXQ6 854 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 SMYD4Q8IYR2 804 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ZNF473Q8WTR7 871 aaKnown RBP6.99□□□□□ -1.29
VPS13D-209ENST00000487188 ALS2CR12Q96Q35 445 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 BAIAP2L1Q9UHR4 511 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 NCAPD2Q15021 1401 aa6.99□□□□□ -1.29
VPS13D-209ENST00000487188 DIP2AQ14689 1571 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 MAST3O60307 1309 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 COL15A1P39059 1388 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 NR1D1P20393 614 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 ERVK-24P63145 666 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 DDR1Q08345 913 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 ALS2CLQ60I27 953 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC13Q8IYE1 715 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC82Q8N4S0 544 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 OR8K1Q8NGG5 319 aa6.98□□□□□ -1.29
VPS13D-209ENST00000487188 CCDC43Q96MW1 224 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms