RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 IL17REQ8NFR9 667 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 SH2D4AQ9H788 454 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 SAR1BQ9Y6B6 198 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 ADCY9O60503 1353 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 BACH1O14867 736 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PSMB7Q99436 277 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 IFIH1Q9BYX4 1025 aaKnown RBP18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PPP2R2CQ9Y2T4 447 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 hCG_1642624A0A1W2PR95 340 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 HSPD1P10809 573 aaKnown RBP18.28■□□□□ 0.52
COL7A1-210ENST00000487017 SMTNP53814 917 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 RBM6P78332 1123 aaKnown RBP18.28■□□□□ 0.52
COL7A1-210ENST00000487017 NCAPH2Q6IBW4 605 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 SYCE1Q8N0S2 351 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PKD2L1Q9P0L9 805 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 PCDHA7Q9UN72 937 aa18.28■□□□□ 0.52
COL7A1-210ENST00000487017 MAK16Q9BXY0 300 aaKnown RBP18.27■□□□□ 0.52
COL7A1-210ENST00000487017 OSBPL3Q9H4L5 887 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 MKRN1Q9UHC7 482 aaKnown RBP18.27■□□□□ 0.52
COL7A1-210ENST00000487017 GNPATO15228 680 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 FLOT1O75955 427 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 INF2Q27J81 1249 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 ERCC6LQ2NKX8 1250 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 TRIM31Q9BZY9 425 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 RPS6KA1Q15418 735 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 TRIML1Q8N9V2 468 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 ZNF521Q96K83 1311 aa18.27■□□□□ 0.52
COL7A1-210ENST00000487017 BTG4Q9NY30 223 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 MAGI3Q5TCQ9 1506 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 ARHGEF5Q12774 1597 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 KCNJ18B7U540 433 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 KCNJ12Q14500 433 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 TYW1BQ6NUM6 668 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 ZNF365Q70YC5 407 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 CNBD1Q8NA66 436 aa18.27■□□□□ 0.51
COL7A1-210ENST00000487017 ZNF215Q9UL58 517 aaPredicted RBP18.27■□□□□ 0.51
COL7A1-210ENST00000487017 ARHGAP25P42331 645 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 MTMR3Q13615 1198 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 CLUL1Q15846 466 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 EFCAB8A8MWE9 144 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 DAAM2Q86T65 1068 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 OR8K1Q8NGG5 319 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 ATP11AP98196 1134 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 LIN9Q5TKA1 542 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 PPFIBP2Q8ND30 876 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 CTTNBP2NLQ9P2B4 639 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 DNM3Q9UQ16 869 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 ETF1P62495 437 aaKnown RBP18.26■□□□□ 0.51
COL7A1-210ENST00000487017 CHAMP1Q96JM3 812 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 EXOC7Q9UPT5 735 aa18.26■□□□□ 0.51
COL7A1-210ENST00000487017 KCNQ3O43525 872 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 NCBP1Q09161 790 aaKnown RBP18.25■□□□□ 0.51
COL7A1-210ENST00000487017 RRAGAQ7L523 313 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 FAM207AQ9NSI2 230 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-210ENST00000487017 TBC1D7Q9P0N9 293 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 AGTPBP1Q9UPW5 1226 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 FAM169AQ9Y6X4 670 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 MORC3Q14149 939 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 TRAPPC3LQ5T215 181 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 TAOK1Q7L7X3 1001 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 DESI2Q9BSY9 194 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.25■□□□□ 0.512e-7■■■■□ 24.5
COL7A1-210ENST00000487017 PARP3Q9Y6F1 533 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 ARHGEF35A5YM69 484 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 SP4Q02446 784 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 ORAI2Q96SN7 254 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 RABEP2Q9H5N1 569 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 CCDC169A6NNP5 214 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 STX10O60499 249 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 CDC25BP30305 580 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 FYB2Q5VWT5 728 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 NELFCDQ8IXH7 590 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 MAP4K1Q92918 833 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 ATP10AO60312 1499 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 NDUFA8P51970 172 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 TCIRG1Q13488 830 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 DNAJC10Q8IXB1 793 aa18.25■□□□□ 0.51
COL7A1-210ENST00000487017 UAP1Q16222 522 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CCDC14Q49A88 953 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 GPIHBP1Q8IV16 184 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 C8orf37Q96NL8 207 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CDCA7Q9BWT1 371 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 TFCP2L1Q9NZI6 479 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 ERCC3P19447 782 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 TFAP4Q01664 338 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 PEX26Q7Z412 305 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 C2CD5Q86YS7 1000 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 TRIM58Q8NG06 486 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 GGA1Q9UJY5 639 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CFAP157Q5JU67 520 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 TDRD7Q8NHU6 1098 aaKnown RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 STMN2Q93045 179 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CCDC87Q9NVE4 849 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 PYCARDQ9ULZ3 195 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CD2BP2O95400 341 aaKnown RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 SCRN1Q12765 414 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 IFNL3Q8IZI9 196 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 REXO1Q8N1G1 1221 aaKnown RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 ARPP21Q9UBL0 812 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-210ENST00000487017 CABS1Q96KC9 395 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms