RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 LOC285556D6RIA3 1793 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 CHMLP26374 656 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 SHMT1P34896 483 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 IRX3P78415 501 aaPredicted RBP20.31■□□□□ 0.84
VIM-205ENST00000485947 JAG1P78504 1218 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 GIMAP6Q6P9H5 292 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 SDR42E1Q8WUS8 393 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 FSD1Q9BTV5 496 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 KIAA1683Q9H0B3 1180 aa20.31■□□□□ 0.84
VIM-205ENST00000485947 ASCC2Q9H1I8 757 aaPredicted RBP20.31■□□□□ 0.84
VIM-205ENST00000485947 CAPN2P17655 700 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 CTGFP29279 349 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 FXR1P51114 621 aaKnown RBP eCLIP20.3■□□□□ 0.84
VIM-205ENST00000485947 RAET1EQ8TD07 263 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 CCDC17Q96LX7 622 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 TSHZ2Q9NRE2 1034 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 MORF4L1Q9UBU8 362 aa20.3■□□□□ 0.84
VIM-205ENST00000485947 MYPNQ86TC9 1320 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 IRF5Q13568 498 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 RUFY2Q8WXA3 655 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 APPBP2Q92624 585 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 COA7Q96BR5 231 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 UPF2Q9HAU5 1272 aaKnown RBP20.29■□□□□ 0.84
VIM-205ENST00000485947 DIAPH3Q9NSV4 1193 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 DDX60LQ5H9U9 1706 aaKnown RBP20.29■□□□□ 0.84
VIM-205ENST00000485947 BRCA2P51587 3418 aa20.29■□□□□ 0.84
VIM-205ENST00000485947 TNPO2O14787 897 aaKnown RBP20.28■□□□□ 0.84
VIM-205ENST00000485947 RNF113AO15541 343 aaKnown RBP20.28■□□□□ 0.84
VIM-205ENST00000485947 GNAT2P19087 354 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 GRK4P32298 578 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 RAB3GAP1Q15042 981 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 SLC4A8Q2Y0W8 1093 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 C12orf60Q5U649 245 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 ANKRD13CQ8N6S4 541 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 SLAIN1Q8ND83 568 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 PXYLP1Q8TE99 480 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 EMILIN3Q9NT22 766 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 ARPP21Q9UBL0 812 aaPredicted RBP20.28■□□□□ 0.84
VIM-205ENST00000485947 SLC4A4Q9Y6R1 1079 aa20.28■□□□□ 0.84
VIM-205ENST00000485947 RAD50Q92878 1312 aa20.27■□□□□ 0.84
VIM-205ENST00000485947 TMEM179Q6ZVK1 233 aa20.27■□□□□ 0.84
VIM-205ENST00000485947 STRBPQ96SI9 672 aaKnown RBP20.27■□□□□ 0.84
VIM-205ENST00000485947 FEZ1Q99689 392 aa20.27■□□□□ 0.84
VIM-205ENST00000485947 ESYT1Q9BSJ8 1104 aa20.27■□□□□ 0.84
VIM-205ENST00000485947 PUS7LQ9H0K6 701 aaKnown RBP20.27■□□□□ 0.84
VIM-205ENST00000485947 PRKAB2O43741 272 aa20.26■□□□□ 0.83
VIM-205ENST00000485947 SBK1Q52WX2 424 aa20.26■□□□□ 0.83
VIM-205ENST00000485947 NAV1Q8NEY1 1877 aa20.26■□□□□ 0.83
VIM-205ENST00000485947 USP17L15C9J2P7 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L13C9JLJ4 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L12C9JPN9 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L11C9JVI0 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L21D6R901 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L18D6R9N7 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L22D6RA61 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L17D6RBQ6 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L19D6RCP7 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L20D6RJB6 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 REC8O95072 547 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 HERVK_113P62684 666 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 UBXN2AP68543 259 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 PRKCZQ05513 592 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 USP17L24Q0WX57 530 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 C16orf86Q6ZW13 317 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 GPRC5AQ8NFJ5 357 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 NKX2-3Q8TAU0 364 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 P2RX7Q99572 595 aaKnown RBP20.25■□□□□ 0.83
VIM-205ENST00000485947 SZT2Q5T011 3432 aa20.25■□□□□ 0.83
VIM-205ENST00000485947 RBBP6Q7Z6E9 1792 aaKnown RBP20.24■□□□□ 0.83
VIM-205ENST00000485947 EPB41L2O43491 1005 aaKnown RBP20.24■□□□□ 0.83
VIM-205ENST00000485947 SEC24BO95487 1268 aa20.24■□□□□ 0.83
VIM-205ENST00000485947 FLT3LGP49771 235 aa20.24■□□□□ 0.83
VIM-205ENST00000485947 MFAP1P55081 439 aaKnown RBP20.24■□□□□ 0.83
VIM-205ENST00000485947 SHROOM1Q2M3G4 852 aaPredicted RBP20.24■□□□□ 0.83
VIM-205ENST00000485947 LBX2Q6XYB7 198 aa20.24■□□□□ 0.83
VIM-205ENST00000485947 SH2D4AQ9H788 454 aa20.24■□□□□ 0.83
VIM-205ENST00000485947 CEP290O15078 2479 aa20.24■□□□□ 0.83
VIM-205ENST00000485947 POTEFA5A3E0 1075 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 GUCY1A2P33402 732 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 SLFNL1Q499Z3 407 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 CTR9Q6PD62 1173 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 CATSPERGQ6ZRH7 1159 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 SH3TC2Q8TF17 1288 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 LPAR1Q92633 364 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 OSBP2Q969R2 916 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 ZNF287Q9HBT7 754 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 TRIOBPQ9H2D6 2365 aa20.23■□□□□ 0.83
VIM-205ENST00000485947 MPHOSPH10O00566 681 aaKnown RBP20.22■□□□□ 0.83
VIM-205ENST00000485947 SGSM2O43147 1006 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 MAPK4P31152 587 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 CDK8P49336 464 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 SEPT2Q15019 361 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 ARHGEF10LQ9HCE6 1279 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 RABGAP1Q9Y3P9 1069 aa20.22■□□□□ 0.83
VIM-205ENST00000485947 GSG1L2A8MUP6 293 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 GPAA1O43292 621 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 ADCY3O60266 1144 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 CYP2D6P10635 497 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 VCAM1P19320 739 aa20.21■□□□□ 0.83
VIM-205ENST00000485947 CCNA1P78396 465 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms