RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GPAA1O43292 621 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 NUDT7P0C024 238 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 INPP5BP32019 993 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 PABPC4Q13310 644 aaKnown RBP eCLIP9.59□□□□□ -0.87
USP40-216ENST00000485943 RAB3GAP1Q15042 981 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 TAF1CQ15572 869 aaPredicted RBP9.59□□□□□ -0.87
USP40-216ENST00000485943 CERKLQ49MI3 558 aaPredicted RBP9.59□□□□□ -0.87
USP40-216ENST00000485943 ARSIQ5FYB1 569 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 LDLRAD1Q5T700 205 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 GPR153Q6NV75 609 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 FASTKD5Q7L8L6 764 aaKnown RBP9.59□□□□□ -0.87
USP40-216ENST00000485943 STK11IPQ8N1F8 1099 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 OTUD7AQ8TE49 926 aaPredicted RBP9.59□□□□□ -0.87
USP40-216ENST00000485943 TEPSINQ96N21 525 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 TBC1D2Q9BYX2 928 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 ARPP21Q9UBL0 812 aaPredicted RBP9.59□□□□□ -0.87
USP40-216ENST00000485943 TSKSQ9UJT2 592 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 ZHX2Q9Y6X8 837 aa9.59□□□□□ -0.87
USP40-216ENST00000485943 SPDYE5A6NIY4 337 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 USP17L5A8MUK1 530 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 LBX1P52954 281 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 PDE4BQ07343 736 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 PPIL2Q13356 520 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 ABCB5Q2M3G0 1257 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 LHX8Q68G74 356 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 CDAN1Q8IWY9 1227 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 ZFPM1Q8IX07 1006 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 ZNF444Q8N0Y2 327 aaPredicted RBP9.58□□□□□ -0.88
USP40-216ENST00000485943 SMCR8Q8TEV9 937 aaPredicted RBP9.58□□□□□ -0.88
USP40-216ENST00000485943 SH2D4AQ9H788 454 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 ZFYVE28Q9HCC9 887 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 SWAP70Q9UH65 585 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 PNMA3Q9UL41 463 aa9.58□□□□□ -0.88
USP40-216ENST00000485943 DOCK1Q14185 1865 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 FOCADQ5VW36 1801 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 BAZ2AQ9UIF9 1905 aaKnown RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 FOXN1O15353 648 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 GDF11O95390 407 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 MCMDC2Q4G0Z9 681 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 CWC27Q6UX04 472 aaKnown RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 KIAA1211Q6ZU35 1233 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 PI4K2BQ8TCG2 481 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 ZNF384Q8TF68 577 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 PHOX2BQ99453 314 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 RIOK1Q9BRS2 568 aaKnown RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 PUS7LQ9H0K6 701 aaKnown RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 ZSWIM6Q9HCJ5 1215 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 DCP1AQ9NPI6 582 aaPredicted RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 HELLSQ9NRZ9 838 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 WBP1LQ9NX94 342 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 SAGE1Q9NXZ1 904 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 DAXXQ9UER7 740 aaPredicted RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 STAP2Q9UGK3 403 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 CTDP1Q9Y5B0 961 aaPredicted RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 ATRNL1Q5VV63 1379 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 COL2A1P02458 1487 aaPredicted RBP9.57□□□□□ -0.88
USP40-216ENST00000485943 CDK5RAP2Q96SN8 1893 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 OTOFQ9HC10 1997 aa9.57□□□□□ -0.88
USP40-216ENST00000485943 ATAD5Q96QE3 1844 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 SSC5DA1L4H1 1573 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 FAM155AB1AL88 458 aaPredicted RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 PATL2C9JE40 543 aaKnown RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 USP17L12C9JPN9 530 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 USP17L21D6R901 530 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 CAP2P40123 477 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 IRX3P78415 501 aaPredicted RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 NOL9Q5SY16 702 aaKnown RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 PLEKHM2Q8IWE5 1019 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 ZNF454Q8N9F8 522 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 ZDHHC16Q969W1 377 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 PARK7Q99497 189 aaKnown RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 REPIN1Q9BWE0 567 aaKnown RBP9.56□□□□□ -0.88
USP40-216ENST00000485943 ARHGEF10LQ9HCE6 1279 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 GINM1Q9NU53 330 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 RNF186Q9NXI6 227 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 SNCAIPQ9Y6H5 919 aa9.56□□□□□ -0.88
USP40-216ENST00000485943 TCRBV5S4A2TA0A5A2 114 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 CXCL11O14625 94 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 PRKAB2O43741 272 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 TBC1D8O95759 1140 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 GH2P01242 217 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 PTPRAP18433 802 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 USP14P54578 494 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 SPP2Q13103 211 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 ZYXQ15942 572 aaKnown RBP9.55□□□□□ -0.88
USP40-216ENST00000485943 RRP12Q5JTH9 1297 aaKnown RBP9.55□□□□□ -0.88
USP40-216ENST00000485943 PPP4R3BQ5MIZ7 849 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 C6orf132Q5T0Z8 1188 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 TTC22Q5TAA0 569 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 GIMAP6Q6P9H5 292 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 TNS4Q8IZW8 715 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 ZNF280CQ8ND82 737 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 OSBP2Q969R2 916 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 CCDC17Q96LX7 622 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 TMUB1Q9BVT8 246 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 ADAM33Q9BZ11 813 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 EHD4Q9H223 541 aa9.55□□□□□ -0.88
USP40-216ENST00000485943 SCUBE2Q9NQ36 999 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms