RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 U3KQE9 123 aa6.19□□□□□ -1.42
VPS50-217ENST00000485140 H3BS24 57 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 CBX7O95931 251 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 GLI1P08151 1106 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 RNF4P78317 190 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 RAD51AP2Q09MP3 1159 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 SNAP47Q5SQN1 464 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 FAM13CQ8NE31 585 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 KIRREL1Q96J84 757 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 RHOVQ96L33 236 aa6.18□□□□□ -1.42
VPS50-217ENST00000485140 CARS2Q9HA77 564 aaKnown RBP6.18□□□□□ -1.42
VPS50-217ENST00000485140 FAM221AA4D161 298 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 CTSHP09668 335 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 CD96P40200 585 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 KRTAP19-4Q3LI73 84 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 TMEM67Q5HYA8 995 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 DNAJB8Q8NHS0 232 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 ACSF2Q96CM8 615 aaPredicted RBP6.17□□□□□ -1.42
VPS50-217ENST00000485140 CCDC74BQ96LY2 380 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 LRRC3Q9BY71 257 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 GPR62Q9BZJ7 368 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 ASCC2Q9H1I8 757 aaPredicted RBP6.17□□□□□ -1.42
VPS50-217ENST00000485140 ATP13A1Q9HD20 1204 aa6.17□□□□□ -1.42
VPS50-217ENST00000485140 SUPT16HQ9Y5B9 1047 aaKnown RBP6.17□□□□□ -1.42
VPS50-217ENST00000485140 LRRC10BA6NIK2 292 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 C8AP07357 584 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 ENDOUP21128 410 aaKnown RBP6.16□□□□□ -1.42
VPS50-217ENST00000485140 CCNFP41002 786 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 TNNI2P48788 182 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 RBM10P98175 930 aaKnown RBP6.16□□□□□ -1.42
VPS50-217ENST00000485140 FZD5Q13467 585 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 HS2ST1Q7LGA3 356 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 CDH24Q86UP0 819 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 LILRA2Q8N149 483 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 ENOX1Q8TC92 643 aaKnown RBP6.16□□□□□ -1.42
VPS50-217ENST00000485140 XAGE3Q8WTP9 111 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 UBE2FQ969M7 185 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 BCL2L13Q9BXK5 485 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 GZF1Q9H116 711 aaPredicted RBP6.16□□□□□ -1.42
VPS50-217ENST00000485140 KCNQ5Q9NR82 932 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 TLR6Q9Y2C9 796 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 CARMIL2Q6F5E8 1435 aa6.16□□□□□ -1.42
VPS50-217ENST00000485140 PF4P02776 101 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 TNK2Q07912 1038 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 LRRFIP1Q32MZ4 808 aaKnown RBP6.15□□□□□ -1.42
VPS50-217ENST00000485140 FAM196AQ6ZSG2 479 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 REC114Q7Z4M0 266 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 OXR1Q8N573 874 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 ZSWIM5Q9P217 1185 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 TMEM59LQ9UK28 342 aa6.15□□□□□ -1.42
VPS50-217ENST00000485140 ZBTB7CA1YPR0 619 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 DBX1A6NMT0 343 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 PRR33A8MZF0 331 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 HTR3BO95264 441 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 F13A1P00488 732 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 CDK8P49336 464 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 CHRNEQ04844 493 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 DUSP4Q13115 394 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 MPZL3Q6UWV2 235 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 BNC2Q6ZN30 1099 aaPredicted RBP6.14□□□□□ -1.43
VPS50-217ENST00000485140 ERMP1Q7Z2K6 904 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 SPPL2CQ8IUH8 684 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS50-217ENST00000485140 REV1Q9UBZ9 1251 aa6.14□□□□□ -1.43
VPS50-217ENST00000485140 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.14□□□□□ -1.43
VPS50-217ENST00000485140 ATE1O95260 518 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 TPP2P29144 1249 aaPredicted RBP6.13□□□□□ -1.43
VPS50-217ENST00000485140 TSPYL5Q86VY4 417 aaPredicted RBP6.13□□□□□ -1.43
VPS50-217ENST00000485140 PHACTR4Q8IZ21 702 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 REXO1Q8N1G1 1221 aaKnown RBP6.13□□□□□ -1.43
VPS50-217ENST00000485140 GOLM1Q8NBJ4 401 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 RIN3Q8TB24 985 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 GMIPQ9P107 970 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 DUSP13Q9UII6 198 aa6.13□□□□□ -1.43
VPS50-217ENST00000485140 FITM1A5D6W6 292 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 SRFP11831 508 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 GBP1P32455 592 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 EIF4A3P38919 411 aaKnown RBP6.12□□□□□ -1.43
VPS50-217ENST00000485140 CLEC16AQ2KHT3 1053 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 GAB4Q2WGN9 574 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 TTC6Q86TZ1 520 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 CREG2Q8IUH2 290 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 DTWD2Q8NBA8 298 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 PDZD8Q8NEN9 1154 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 ABHD4Q8TB40 342 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 MYLIPQ8WY64 445 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 FAM161BQ96MY7 647 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 DPH2Q9BQC3 489 aaPredicted RBP6.12□□□□□ -1.43
VPS50-217ENST00000485140 SLAMF8Q9P0V8 285 aa6.12□□□□□ -1.43
VPS50-217ENST00000485140 RGS13O14921 159 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 TSPAN15O95858 294 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 LTKP29376 864 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 SNX17Q15036 470 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 NR0B2Q15466 257 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 FBXO15Q8NCQ5 510 aaPredicted RBP6.11□□□□□ -1.43
VPS50-217ENST00000485140 PPP1R13LQ8WUF5 828 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 KREMEN1Q96MU8 473 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 TOX2Q96NM4 488 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 DUSP15Q9H1R2 295 aaPredicted RBP6.11□□□□□ -1.43
VPS50-217ENST00000485140 PRDM7Q9NQW5 492 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms