RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 LRRFIP2Q9Y608 721 aaKnown RBP7.62□□□□□ -1.19
PTCD3-215ENST00000484203 CACNA1FO60840 1977 aa7.62□□□□□ -1.19
PTCD3-215ENST00000484203 PDS5AQ29RF7 1337 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 F8W031 263 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 AXIN1O15169 862 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 SRGAP3O43295 1099 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 ZBTB48P10074 688 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 TRIM27P14373 513 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 MVPQ14764 893 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 NOM1Q5C9Z4 860 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 LDLRAD1Q5T700 205 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 SPTY2D1Q68D10 685 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 OTUD7BQ6GQQ9 843 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 HHIPL2Q6UWX4 724 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 RASAL3Q86YV0 1011 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 FTSJ3Q8IY81 847 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 DZIP1LQ8IYY4 767 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 FRAT1Q92837 279 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 PRMT6Q96LA8 375 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 ZDHHC15Q96MV8 337 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 CHMP4BQ9H444 224 aaKnown RBP7.61□□□□□ -1.19
PTCD3-215ENST00000484203 VEZTQ9HBM0 779 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 DENND2AQ9ULE3 1009 aa7.61□□□□□ -1.19
PTCD3-215ENST00000484203 COL4A1P02462 1669 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ZBED9Q6R2W3 1325 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 MANSC4A6NHS7 340 aaPredicted RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 POM121CA8CG34 1229 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ESPNB1AK53 854 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 UBE2Q2LH0YL09 131 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 WDHD1O75717 1129 aaPredicted RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 SOX11P35716 441 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 CRKP46108 304 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 TM4SF4P48230 202 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 WDR4P57081 412 aaKnown RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 CHAF1AQ13111 956 aaPredicted RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 RASA3Q14644 834 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 PKN2Q16513 984 aaKnown RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ATG9AQ7Z3C6 839 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 FAM83AQ86UY5 434 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ANKRD13AQ8IZ07 590 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 CSRNP1Q96S65 589 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 MEIS3Q99687 375 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ZMYND15Q9H091 742 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 RNF186Q9NXI6 227 aa7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ZNF70Q9UC06 446 aaPredicted RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 ANGEL1Q9UNK9 670 aaKnown RBP7.6□□□□□ -1.19
PTCD3-215ENST00000484203 SALL1Q9NSC2 1324 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 CLRN2A0PK11 232 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 ZIC2O95409 532 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-215ENST00000484203 MAP4K4O95819 1239 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-215ENST00000484203 LDHBP07195 334 aaKnown RBP7.59□□□□□ -1.19
PTCD3-215ENST00000484203 SMCPP49901 116 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-215ENST00000484203 DHX9Q08211 1270 aaKnown RBP7.59□□□□□ -1.19
PTCD3-215ENST00000484203 G3BP1Q13283 466 aaKnown RBP eCLIP7.59□□□□□ -1.191e-8■■■□□ 17
PTCD3-215ENST00000484203 RNF20Q5VTR2 975 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 PRAMEF18Q5VWM3 479 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 DCAF15Q66K64 600 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 DLK2Q6UY11 383 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 KLHDC4Q8TBB5 520 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 CFHR5Q9BXR6 569 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 SIL1Q9H173 461 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 JAG2Q9Y219 1238 aa7.59□□□□□ -1.19
PTCD3-215ENST00000484203 ERVH48-1M5A8F1 160 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 CAPN5O15484 640 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-215ENST00000484203 TRPA1O75762 1119 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 BCAR3O75815 825 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 TIMP2P16035 220 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 ARHGEF6Q15052 776 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 GORABQ5T7V8 394 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 PPP1R26Q5T8A7 1209 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-215ENST00000484203 TMED8Q6PL24 325 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-215ENST00000484203 ITPKCQ96DU7 683 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 ABHD8Q96I13 439 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 TDRD3Q9H7E2 651 aaKnown RBP7.58□□□□□ -1.2
PTCD3-215ENST00000484203 PGPEP1Q9NXJ5 209 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 IQSEC3Q9UPP2 1182 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-215ENST00000484203 CSADQ9Y600 493 aa7.58□□□□□ -1.2
PTCD3-215ENST00000484203 LDHCP07864 332 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 UQCRFS1P1P0C7P4 283 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 GSTO1P78417 241 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 SLFNL1Q499Z3 407 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 HSP90AB4PQ58FF6 505 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 NBPF12Q5TAG4 269 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 CCDC102BQ68D86 513 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 APOBEC3HQ6NTF7 200 aaKnown RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 CTU1Q7Z7A3 348 aaKnown RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 DZIP1Q86YF9 867 aaKnown RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 KLF16Q9BXK1 252 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 ALG2Q9H553 416 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 GPR108Q9NPR9 543 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 TMPRSS4Q9NRS4 437 aa7.57□□□□□ -1.2
PTCD3-215ENST00000484203 RPAP1Q9BWH6 1393 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-215ENST00000484203 PAPPA2Q9BXP8 1791 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 TAF1P21675 1872 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 A0A1B0GUL7 405 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 TCP10L2B9ZVM9 353 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 TRAK2O60296 914 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 USP2O75604 605 aaPredicted RBP7.56□□□□□ -1.2
PTCD3-215ENST00000484203 GTF2A2P52657 109 aa7.56□□□□□ -1.2
PTCD3-215ENST00000484203 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms