RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PLCD1P51178 756 aa14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 USP17L24Q0WX57 530 aa14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 AMOTL1Q8IY63 956 aa14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 TRMT44Q8IYL2 757 aaKnown RBP14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 P2RX7Q99572 595 aaKnown RBP14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 BOLA2Q9H3K6 86 aa14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 GJD2Q9UKL4 321 aa14.65□□□□□ -0.06
SQSTM1-207ENST00000481335 ELNP15502 786 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 ERVK-9P63128 1117 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 ERVK-24P63145 666 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 RAB3GAP1Q15042 981 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 SHROOM1Q2M3G4 852 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 LCORLQ8N3X6 602 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 DDRGK1Q96HY6 314 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 GPATCH3Q96I76 525 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 NUDT12Q9BQG2 462 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 UNC93B1Q9H1C4 597 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 RABGAP1Q9Y3P9 1069 aa14.64□□□□□ -0.07
SQSTM1-207ENST00000481335 A0A0G2JMZ2 1700 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 VCAM1P19320 739 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 CCNA1P78396 465 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 C20orf194Q5TEA3 1177 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 TMEM179Q6ZVK1 233 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 ANKLE1Q8NAG6 615 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 SDR42E1Q8WUS8 393 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 DCTPP1Q9H773 170 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 ECHDC1Q9NTX5 307 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 RBPJLQ9UBG7 517 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 RPTORQ8N122 1335 aa14.63□□□□□ -0.07
SQSTM1-207ENST00000481335 ZNF236Q9UL36 1845 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 GLRX3O76003 335 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 FARP2O94887 1054 aaPredicted RBP14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 MBD4O95243 580 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 CATSPERGQ6ZRH7 1159 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 CCAR1Q8IX12 1150 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 EDC3Q96F86 508 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 CCDC17Q96LX7 622 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 CRISPLD2Q9H0B8 497 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 SH2D4AQ9H788 454 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 TXNRD2Q9NNW7 524 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 PARP14Q460N5 1801 aa14.62□□□□□ -0.07
SQSTM1-207ENST00000481335 RLFQ13129 1914 aa14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 GUCY1A2P33402 732 aa14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 RGS2P41220 211 aa14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 LPAR1Q92633 364 aa14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.61□□□□□ -0.075e-9■■■■□ 21.6
SQSTM1-207ENST00000481335 ARMT1Q9H993 441 aa14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 HMX1Q9NP08 348 aaPredicted RBP14.61□□□□□ -0.07
SQSTM1-207ENST00000481335 GREB1LQ9C091 1923 aaPredicted RBP14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 SEPT2Q15019 361 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 ZYXQ15942 572 aaKnown RBP14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 LRRFIP1Q32MZ4 808 aaKnown RBP14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 HABP4Q5JVS0 413 aaKnown RBP14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 MAP3K21Q5TCX8 1036 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 C12orf60Q5U649 245 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 GIMAP6Q6P9H5 292 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 GPR142Q7Z601 462 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 USP6NLQ92738 828 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 DEFB118Q96PH6 123 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 APBA2Q99767 749 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 ARHGEF10LQ9HCE6 1279 aa14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 ARPP21Q9UBL0 812 aaPredicted RBP14.6□□□□□ -0.07
SQSTM1-207ENST00000481335 MPHOSPH10O00566 681 aaKnown RBP14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 TFRCP02786 760 aaKnown RBP14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 ZFYP08048 801 aaPredicted RBP14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 MORN1Q5T089 497 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 C16orf86Q6ZW13 317 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 PLEKHH3Q7Z736 793 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 KBTBD3Q8NAB2 608 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 ACER1Q8TDN7 264 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 TRIB2Q92519 343 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 PAGR1Q9BTK6 254 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 RPAP3Q9H6T3 665 aaPredicted RBP14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 HOXC10Q9NYD6 342 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 NR2E3Q9Y5X4 410 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 TTC41PQ6P2S7 1318 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 FRMPD3Q5JV73 1810 aa14.59□□□□□ -0.07
SQSTM1-207ENST00000481335 ALPK3Q96L96 1907 aa14.58□□□□□ -0.07
SQSTM1-207ENST00000481335 TRIOBPQ9H2D6 2365 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 SPDYE16A6NNV3 312 aaPredicted RBP14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 ZKSCAN1P17029 563 aaPredicted RBP14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 Q3C1V9 767 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 MB21D1Q8N884 522 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 DPF3Q92784 378 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 PORCNQ9H237 461 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 CWC22Q9HCG8 908 aaKnown RBP14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 TMX2Q9Y320 296 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 SLC4A4Q9Y6R1 1079 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 ROBO3Q96MS0 1386 aa14.58□□□□□ -0.08
SQSTM1-207ENST00000481335 RANBP2P49792 3224 aaKnown RBP14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 SLC15A5A6NIM6 579 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 USP17L12C9JPN9 530 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 USP17L21D6R901 530 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 ERC2O15083 957 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 PRKAB2O43741 272 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 SMARCA5O60264 1052 aaPredicted RBP14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 CNMDO75829 334 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 HOXC6P09630 235 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 GNAT2P19087 354 aa14.57□□□□□ -0.08
SQSTM1-207ENST00000481335 CYP2B6P20813 491 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms